Lulu Chen
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/CAMTHC |
| Branch: RELEASE_3_10 |
| Last Commit: 306688f |
| Last Changed Date: 2019-10-29 13:11:12 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:30:37 -0400 (Wed, 15 Apr 2020).
| Package 218/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Lulu Chen
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: CAMTHC |
| Version: 1.4.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CAMTHC.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings CAMTHC_1.4.0.tar.gz |
| StartedAt: 2020-04-15 01:46:25 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 01:53:10 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 405.5 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: CAMTHC.Rcheck |
| Warnings: 1 |
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###
### Running command:
###
### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CAMTHC.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings CAMTHC_1.4.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/CAMTHC.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CAMTHC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CAMTHC' version '1.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CAMTHC' can be installed ... WARNING
Found the following significant warnings:
Warning: Package 'CAMTHC' is deprecated and will be removed from Bioconductor
See 'C:/Users/biocbuild/bbs-3.10-bioc/meat/CAMTHC.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
MGsforA 26.75 0.05 26.80
CAMASest 16.05 0.10 16.14
CAM 15.77 0.08 15.84
redoASest 14.83 0.14 15.14
CAMPrep 14.50 0.08 14.58
AS-accessor 14.11 0.19 14.59
CAMMGCluster 13.20 0.04 13.25
reselectMG 11.53 0.04 11.58
PCAmat 10.92 0.08 11.00
XWProj 5.03 0.06 5.09
cornerSort 0.02 0.02 18.75
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
MGsforA 25.54 0.04 25.56
redoASest 14.31 0.05 14.39
PCAmat 13.91 0.06 13.98
CAMPrep 13.36 0.06 13.42
CAMASest 13.19 0.03 13.31
CAMMGCluster 12.98 0.06 13.05
CAM 12.04 0.10 12.14
AS-accessor 11.12 0.07 11.19
reselectMG 11.07 0.04 11.11
XWProj 6.51 0.05 6.64
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
'C:/Users/biocbuild/bbs-3.10-bioc/meat/CAMTHC.Rcheck/00check.log'
for details.
CAMTHC.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/CAMTHC_1.4.0.tar.gz && rm -rf CAMTHC.buildbin-libdir && mkdir CAMTHC.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAMTHC.buildbin-libdir CAMTHC_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL CAMTHC_1.4.0.zip && rm CAMTHC_1.4.0.tar.gz CAMTHC_1.4.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 2500k 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 2500k 100 2500k 0 0 18.6M 0 --:--:-- --:--:-- --:--:-- 19.0M
install for i386
* installing *source* package 'CAMTHC' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CAMTHC'
finding HTML links ... done
AS-accessor html
AfromMarkers html
CAM html
CAMASObj-class html
CAMASest html
CAMMGCluster html
CAMMGObj-class html
CAMObj-class html
CAMPrep html
CAMPrepObj-class html
CAMTHC-package html
MDL html
MDLObj-class html
MGsforA html
MGstatistic html
PCAmat html
XWProj html
cornerSort html
ratMix3 html
redoASest html
reselectMG html
sffsHull html
simplexplot html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'CAMTHC' is deprecated and will be removed from Bioconductor
version 3.12 . Package renamed to debCAM
** testing if installed package can be loaded from final location
Warning: Package 'CAMTHC' is deprecated and will be removed from Bioconductor
version 3.12 . Package renamed to debCAM
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CAMTHC' ...
** testing if installed package can be loaded
Warning: Package 'CAMTHC' is deprecated and will be removed from Bioconductor
version 3.12 . Package renamed to debCAM
* MD5 sums
packaged installation of 'CAMTHC' as CAMTHC_1.4.0.zip
* DONE (CAMTHC)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'CAMTHC' successfully unpacked and MD5 sums checked
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CAMTHC.Rcheck/tests_i386/testthat.Rout
R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(CAMTHC)
Warning message:
Package 'CAMTHC' is deprecated and will be removed from Bioconductor
version 3.12 . Package renamed to debCAM
>
> test_check("CAMTHC")
== testthat results ===========================================================
[ OK: 5 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
3.60 0.31 3.90
|
CAMTHC.Rcheck/tests_x64/testthat.Rout
R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(CAMTHC)
Warning message:
Package 'CAMTHC' is deprecated and will be removed from Bioconductor
version 3.12 . Package renamed to debCAM
>
> test_check("CAMTHC")
== testthat results ===========================================================
[ OK: 5 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
3.98 0.26 4.23
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CAMTHC.Rcheck/examples_i386/CAMTHC-Ex.timings
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CAMTHC.Rcheck/examples_x64/CAMTHC-Ex.timings
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