Anthony Chiu
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/twoddpcr |
| Branch: RELEASE_3_10 |
| Last Commit: bb6a5aa |
| Last Changed Date: 2019-10-29 13:10:17 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:12:24 -0400 (Wed, 15 Apr 2020).
| Package 1770/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| twoddpcr 1.10.0 Anthony Chiu
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: twoddpcr |
| Version: 1.10.0 |
| Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings twoddpcr_1.10.0.tar.gz |
| StartedAt: 2020-04-15 04:37:02 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 04:39:53 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 170.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: twoddpcr.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings twoddpcr_1.10.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/twoddpcr.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘twoddpcr/DESCRIPTION’ ... OK
* this is package ‘twoddpcr’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘twoddpcr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
knnClassify 13.796 0.040 14.412
flatPlot 9.284 0.084 9.664
ggplot.well 8.428 0.060 8.664
dropletPlot 7.496 0.048 7.685
renormalisePlate 6.292 0.004 6.320
sdRain 5.740 0.000 5.755
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
twoddpcr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL twoddpcr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’ * installing *source* package ‘twoddpcr’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (twoddpcr)
twoddpcr.Rcheck/tests/testthat.Rout
R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(twoddpcr)
>
> test_check("twoddpcr")
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 156 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
10.928 0.144 11.224
twoddpcr.Rcheck/twoddpcr-Ex.timings
| name | user | system | elapsed | |
| amplitudes | 0.808 | 0.020 | 0.832 | |
| basicsSummary | 0.012 | 0.000 | 0.009 | |
| castSummary | 0.024 | 0.004 | 0.028 | |
| classCov | 0.088 | 0.008 | 0.093 | |
| classMeans | 0.088 | 0.000 | 0.090 | |
| classStats | 0.104 | 0.004 | 0.109 | |
| clusterCentres | 1.660 | 0.020 | 1.727 | |
| copiesSummary | 0.008 | 0.000 | 0.009 | |
| ddpcrPlate-class | 0.628 | 0.000 | 0.682 | |
| ddpcrWell-class | 0.052 | 0.000 | 0.058 | |
| ddpcrWell-methods | 0.648 | 0.000 | 0.663 | |
| dropletPlot | 7.496 | 0.048 | 7.685 | |
| exportTable | 0.196 | 0.012 | 0.223 | |
| extractPlateName | 0.004 | 0.000 | 0.000 | |
| extractWellNames | 0.000 | 0.000 | 0.001 | |
| facetPlot | 3.360 | 0.080 | 3.501 | |
| flatPlot | 9.284 | 0.084 | 9.664 | |
| fullCopiesSummary | 0.004 | 0.004 | 0.009 | |
| fullCountsSummary | 0.032 | 0.008 | 0.041 | |
| ggplot.well | 8.428 | 0.060 | 8.664 | |
| gridClassify | 3.724 | 0.020 | 3.842 | |
| heatPlot | 3.788 | 0.004 | 3.945 | |
| kmeansClassify | 2.052 | 0.000 | 2.152 | |
| knnClassify | 13.796 | 0.040 | 14.412 | |
| mahalanobisRain | 1.220 | 0.000 | 1.326 | |
| mutantCopiesSummary | 0.008 | 0.000 | 0.011 | |
| numDroplets | 0.700 | 0.000 | 0.768 | |
| parseClusterCounts | 0.012 | 0.004 | 0.015 | |
| plateClassification | 2.372 | 0.000 | 2.417 | |
| plateClassificationMethod | 0.752 | 0.000 | 0.778 | |
| plateSummary | 3.952 | 0.004 | 4.084 | |
| positiveCounts | 0.036 | 0.000 | 0.035 | |
| readCSVDataFrame | 0.020 | 0.000 | 0.019 | |
| relabelClasses | 0.072 | 0.000 | 0.073 | |
| removeDropletClasses | 1.152 | 0.000 | 1.171 | |
| renormalisePlate | 6.292 | 0.004 | 6.320 | |
| sdRain | 5.740 | 0.000 | 5.755 | |
| setChannelNames | 0.000 | 0.000 | 0.001 | |
| setDropletVolume | 0.000 | 0.000 | 0.001 | |
| sortDataFrame | 0.004 | 0.000 | 0.003 | |
| sortWells | 0.660 | 0.000 | 0.662 | |
| thresholdClassify | 3.148 | 0.000 | 3.150 | |
| wellClassification | 0.056 | 0.000 | 0.057 | |
| wellClassificationMethod | 0.056 | 0.000 | 0.060 | |
| whiteTheme | 1.928 | 0.012 | 1.960 | |
| wildTypeCopiesSummary | 0.008 | 0.000 | 0.006 | |