Johannes Helmuth
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/normr |
| Branch: RELEASE_3_10 |
| Last Commit: f524526 |
| Last Changed Date: 2020-04-09 10:48:03 -0400 (Thu, 09 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:26:52 -0400 (Wed, 15 Apr 2020).
| Package 1160/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| normr 1.12.0 Johannes Helmuth
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: normr |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/normr_1.12.0.tar.gz && rm -rf normr.buildbin-libdir && mkdir normr.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=normr.buildbin-libdir normr_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL normr_1.12.0.zip && rm normr_1.12.0.tar.gz normr_1.12.0.zip |
| StartedAt: 2020-04-14 19:52:41 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:53:55 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 74.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/normr_1.12.0.tar.gz && rm -rf normr.buildbin-libdir && mkdir normr.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=normr.buildbin-libdir normr_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL normr_1.12.0.zip && rm normr_1.12.0.tar.gz normr_1.12.0.zip
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install for i386
* installing *source* package 'normr' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c em.cpp -o em.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c normr_init.c -o normr_init.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o normr.dll tmp.def RcppExports.o em.o normr_init.o -fopenmp -D_GLIBCXX_USE_C99 -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/normr.buildbin-libdir/00LOCK-normr/00new/normr/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'normr'
Creating a new generic function for 'getClasses' in package 'normr'
** help
*** installing help indices
converting help for package 'normr'
finding HTML links ... done
NormRCountConfig-class html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpGWIKp3/R.INSTALL1c783117bd9/normr/man/NormRCountConfig-class.Rd:73: file link 'bamProfile' in package 'bamsignals' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpGWIKp3/R.INSTALL1c783117bd9/normr/man/NormRCountConfig-class.Rd:86: file link 'bamProfile' in package 'bamsignals' does not exist and so has been treated as a topic
NormRFit-class html
normR-diffR html
finding level-2 HTML links ... done
normR-enrichR html
normR-regimeR html
normR html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'normr'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'normr'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'normr' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c em.cpp -o em.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c normr_init.c -o normr_init.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o normr.dll tmp.def RcppExports.o em.o normr_init.o -fopenmp -D_GLIBCXX_USE_C99 -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/normr.buildbin-libdir/normr/libs/x64
** testing if installed package can be loaded
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'normr'
* MD5 sums
packaged installation of 'normr' as normr_1.12.0.zip
* DONE (normr)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'normr' successfully unpacked and MD5 sums checked