Package: nnNorm

Version: 2.50.0

Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:nnNorm.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings nnNorm_2.50.0.tar.gz

StartedAt: 2020-04-15 05:08:02 -0400 (Wed, 15 Apr 2020)

EndedAt: 2020-04-15 05:12:16 -0400 (Wed, 15 Apr 2020)

EllapsedTime: 253.6 seconds

RetCode: 0

Status:  OK

CheckDir: nnNorm.Rcheck

Warnings: 0

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### Running command:
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###   C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:nnNorm.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings nnNorm_2.50.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/nnNorm.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'nnNorm/DESCRIPTION' ... OK
* this is package 'nnNorm' version '2.50.0'
* checking package namespace information ... NOTE
  Namespace with empty importFrom: 'methods'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'nnNorm' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'marray'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
detectSpatialBias: no visible global function definition for 'as'
maNormNN: no visible global function definition for 'as'
maNormNN: no visible global function definition for 'slot<-'
Undefined global functions or variables:
  as slot<-
Consider adding
  importFrom("methods", "as", "slot<-")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
maNormNN          69.45   0.02   69.49
compNorm          35.81   0.07   35.93
detectSpatialBias  9.41   0.02    9.42
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
maNormNN          65.35   0.00   65.41
compNorm          33.59   0.08   33.68
detectSpatialBias  7.56   0.00    7.59
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.10-bioc/meat/nnNorm.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/nnNorm_2.50.0.tar.gz && rm -rf nnNorm.buildbin-libdir && mkdir nnNorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nnNorm.buildbin-libdir nnNorm_2.50.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL nnNorm_2.50.0.zip && rm nnNorm_2.50.0.tar.gz nnNorm_2.50.0.zip
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1472k  100 1472k    0     0  28.9M      0 --:--:-- --:--:-- --:--:-- 31.2M

install for i386

* installing *source* package 'nnNorm' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'nnNorm'
    finding HTML links ... done
    compNorm                                html  
    detectSpatialBias                       html  
    maNormNN                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'nnNorm' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'nnNorm' as nnNorm_2.50.0.zip
* DONE (nnNorm)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'nnNorm' successfully unpacked and MD5 sums checked