Konstantin Krismer
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/idr2d |
| Branch: RELEASE_3_10 |
| Last Commit: 484fd72 |
| Last Changed Date: 2020-03-28 18:03:06 -0400 (Sat, 28 Mar 2020) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:33:06 -0400 (Wed, 15 Apr 2020).
| Package 828/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| idr2d 1.0.4 Konstantin Krismer
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: idr2d |
| Version: 1.0.4 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:idr2d.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings idr2d_1.0.4.tar.gz |
| StartedAt: 2020-04-15 03:59:51 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 04:03:22 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 211.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: idr2d.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:idr2d.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings idr2d_1.0.4.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/idr2d.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'idr2d/DESCRIPTION' ... OK
* this is package 'idr2d' version '1.0.4'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'idr2d' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
estimate_idr 7.12 0.10 7.22
estimate_idr2d 6.69 0.13 6.82
estimate_idr2d_hic 5.14 0.00 5.14
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
estimate_idr2d 6.31 0.00 6.31
estimate_idr 6.11 0.05 6.15
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
idr2d.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/idr2d_1.0.4.tar.gz && rm -rf idr2d.buildbin-libdir && mkdir idr2d.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=idr2d.buildbin-libdir idr2d_1.0.4.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL idr2d_1.0.4.zip && rm idr2d_1.0.4.tar.gz idr2d_1.0.4.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 794k 100 794k 0 0 2665k 0 --:--:-- --:--:-- --:--:-- 2692k
install for i386
* installing *source* package 'idr2d' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'idr2d'
finding HTML links ... done
calculate_midpoint_distance1d html
calculate_midpoint_distance2d html
calculate_relative_overlap1d html
calculate_relative_overlap2d html
chiapet html
chipseq html
determine_anchor_overlap html
draw_hic_contact_map html
draw_idr_distribution_histogram html
draw_rank_idr_scatterplot html
draw_value_idr_scatterplot html
establish_bijection html
establish_bijection1d html
establish_bijection2d html
establish_overlap1d html
establish_overlap2d html
estimate_idr html
estimate_idr1d html
estimate_idr2d html
estimate_idr2d_hic html
hic html
parse_hic_pro_matrix html
parse_juicer_matrix html
preprocess html
remove_nonstandard_chromosomes1d html
remove_nonstandard_chromosomes2d html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'idr2d' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'idr2d' as idr2d_1.0.4.zip
* DONE (idr2d)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'idr2d' successfully unpacked and MD5 sums checked
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idr2d.Rcheck/tests_i386/testthat.Rout
R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(idr2d)
>
> test_check("idr2d")
== testthat results ===========================================================
[ OK: 10 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
4.35 0.45 4.79
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idr2d.Rcheck/tests_x64/testthat.Rout
R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(idr2d)
>
> test_check("idr2d")
== testthat results ===========================================================
[ OK: 10 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
4.95 0.21 5.15
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idr2d.Rcheck/examples_i386/idr2d-Ex.timings
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idr2d.Rcheck/examples_x64/idr2d-Ex.timings
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