Aaron Lun
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/BiocNeighbors |
| Branch: RELEASE_3_10 |
| Last Commit: 1fcb470 |
| Last Changed Date: 2020-02-29 00:44:32 -0400 (Sat, 29 Feb 2020) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:30:46 -0400 (Wed, 15 Apr 2020).
| Package 153/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BiocNeighbors 1.4.2 Aaron Lun
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: BiocNeighbors |
| Version: 1.4.2 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/BiocNeighbors_1.4.2.tar.gz && rm -rf BiocNeighbors.buildbin-libdir && mkdir BiocNeighbors.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocNeighbors.buildbin-libdir BiocNeighbors_1.4.2.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL BiocNeighbors_1.4.2.zip && rm BiocNeighbors_1.4.2.tar.gz BiocNeighbors_1.4.2.zip |
| StartedAt: 2020-04-14 19:09:27 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:13:39 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 252.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/BiocNeighbors_1.4.2.tar.gz && rm -rf BiocNeighbors.buildbin-libdir && mkdir BiocNeighbors.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocNeighbors.buildbin-libdir BiocNeighbors_1.4.2.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL BiocNeighbors_1.4.2.zip && rm BiocNeighbors_1.4.2.tar.gz BiocNeighbors_1.4.2.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
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100 59864 100 59864 0 0 1530k 0 --:--:-- --:--:-- --:--:-- 1719k
install for i386
* installing *source* package 'BiocNeighbors' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c annoy.cpp -o annoy.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c build_annoy.cpp -o build_annoy.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c build_hnsw.cpp -o build_hnsw.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c build_vptree.cpp -o build_vptree.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c distances.cpp -o distances.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c find_annoy.cpp -o find_annoy.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c find_hnsw.cpp -o find_hnsw.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c find_kmknn.cpp -o find_kmknn.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c find_vptree.cpp -o find_vptree.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c hnsw.cpp -o hnsw.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c kmknn.cpp -o kmknn.o
In file included from kmknn.cpp:1:0:
kmknn.cpp: In instantiation of 'Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::List, bool) [with Distance = BNManhattan; Rcpp::NumericMatrix = Rcpp::Matrix<14>; Rcpp::List = Rcpp::Vector<19>]':
kmknn.cpp:218:16: required from here
kmknn.h:37:31: warning: 'Kmknn<BNManhattan>::centers' will be initialized after [-Wreorder]
const Rcpp::NumericMatrix centers;
^
kmknn.h:33:20: warning: 'neighbor_queue Kmknn<BNManhattan>::nearest' [-Wreorder]
neighbor_queue nearest;
^
kmknn.cpp:13:1: warning: when initialized here [-Wreorder]
Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix ex, Rcpp::NumericMatrix cen, Rcpp::List info, bool warn_ties) :
^
In file included from kmknn.cpp:1:0:
kmknn.cpp: In instantiation of 'Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::List, bool) [with Distance = BNEuclidean; Rcpp::NumericMatrix = Rcpp::Matrix<14>; Rcpp::List = Rcpp::Vector<19>]':
kmknn.cpp:219:16: required from here
kmknn.h:37:31: warning: 'Kmknn<BNEuclidean>::centers' will be initialized after [-Wreorder]
const Rcpp::NumericMatrix centers;
^
kmknn.h:33:20: warning: 'neighbor_queue Kmknn<BNEuclidean>::nearest' [-Wreorder]
neighbor_queue nearest;
^
kmknn.cpp:13:1: warning: when initialized here [-Wreorder]
Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix ex, Rcpp::NumericMatrix cen, Rcpp::List info, bool warn_ties) :
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c query_annoy.cpp -o query_annoy.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c query_hnsw.cpp -o query_hnsw.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c query_kmknn.cpp -o query_kmknn.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c query_vptree.cpp -o query_vptree.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c utils.cpp -o utils.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c vptree.cpp -o vptree.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BiocNeighbors.dll tmp.def RcppExports.o annoy.o build_annoy.o build_hnsw.o build_vptree.o distances.o find_annoy.o find_hnsw.o find_kmknn.o find_vptree.o hnsw.o kmknn.o query_annoy.o query_hnsw.o query_kmknn.o query_vptree.o utils.o vptree.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/BiocNeighbors.buildbin-libdir/00LOCK-BiocNeighbors/00new/BiocNeighbors/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BiocNeighbors'
finding HTML links ... done
AnnoyIndex html
AnnoyParam html
BiocNeighborIndex html
BiocNeighborParam html
BiocNeighbors-algorithms html
BiocNeighbors-raw-index html
BiocNeighbors-ties html
HnswIndex html
HnswParam html
KmknnIndex html
KmknnParam html
VptreeIndex html
VptreeParam html
buildAnnoy html
buildHnsw html
buildIndex html
buildKmknn html
buildVptree html
find-methods html
finding level-2 HTML links ... done
findKNN html
findNeighbors html
query-methods html
queryKNN html
queryNeighbors html
rangeFind-methods html
rangeQuery-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'BiocNeighbors' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c annoy.cpp -o annoy.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c build_annoy.cpp -o build_annoy.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c build_hnsw.cpp -o build_hnsw.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c build_vptree.cpp -o build_vptree.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c distances.cpp -o distances.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c find_annoy.cpp -o find_annoy.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c find_hnsw.cpp -o find_hnsw.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c find_kmknn.cpp -o find_kmknn.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c find_vptree.cpp -o find_vptree.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c hnsw.cpp -o hnsw.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c kmknn.cpp -o kmknn.o
In file included from kmknn.cpp:1:0:
kmknn.cpp: In instantiation of 'Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::List, bool) [with Distance = BNManhattan; Rcpp::NumericMatrix = Rcpp::Matrix<14>; Rcpp::List = Rcpp::Vector<19>]':
kmknn.cpp:218:16: required from here
kmknn.h:37:31: warning: 'Kmknn<BNManhattan>::centers' will be initialized after [-Wreorder]
const Rcpp::NumericMatrix centers;
^
kmknn.h:33:20: warning: 'neighbor_queue Kmknn<BNManhattan>::nearest' [-Wreorder]
neighbor_queue nearest;
^
kmknn.cpp:13:1: warning: when initialized here [-Wreorder]
Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix ex, Rcpp::NumericMatrix cen, Rcpp::List info, bool warn_ties) :
^
In file included from kmknn.cpp:1:0:
kmknn.cpp: In instantiation of 'Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::List, bool) [with Distance = BNEuclidean; Rcpp::NumericMatrix = Rcpp::Matrix<14>; Rcpp::List = Rcpp::Vector<19>]':
kmknn.cpp:219:16: required from here
kmknn.h:37:31: warning: 'Kmknn<BNEuclidean>::centers' will be initialized after [-Wreorder]
const Rcpp::NumericMatrix centers;
^
kmknn.h:33:20: warning: 'neighbor_queue Kmknn<BNEuclidean>::nearest' [-Wreorder]
neighbor_queue nearest;
^
kmknn.cpp:13:1: warning: when initialized here [-Wreorder]
Kmknn<Distance>::Kmknn(Rcpp::NumericMatrix ex, Rcpp::NumericMatrix cen, Rcpp::List info, bool warn_ties) :
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c query_annoy.cpp -o query_annoy.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c query_hnsw.cpp -o query_hnsw.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c query_kmknn.cpp -o query_kmknn.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c query_vptree.cpp -o query_vptree.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c utils.cpp -o utils.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppAnnoy/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppHNSW/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c vptree.cpp -o vptree.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BiocNeighbors.dll tmp.def RcppExports.o annoy.o build_annoy.o build_hnsw.o build_vptree.o distances.o find_annoy.o find_hnsw.o find_kmknn.o find_vptree.o hnsw.o kmknn.o query_annoy.o query_hnsw.o query_kmknn.o query_vptree.o utils.o vptree.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/BiocNeighbors.buildbin-libdir/BiocNeighbors/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocNeighbors' as BiocNeighbors_1.4.2.zip
* DONE (BiocNeighbors)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'BiocNeighbors' successfully unpacked and MD5 sums checked