Andrea Gobbi
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/BiRewire |
| Branch: RELEASE_3_10 |
| Last Commit: ae684c9 |
| Last Changed Date: 2019-10-29 13:08:47 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:22:08 -0400 (Wed, 15 Apr 2020).
| Package 181/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BiRewire 3.18.0 Andrea Gobbi
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: BiRewire |
| Version: 3.18.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/BiRewire_3.18.0.tar.gz && rm -rf BiRewire.buildbin-libdir && mkdir BiRewire.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiRewire.buildbin-libdir BiRewire_3.18.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL BiRewire_3.18.0.zip && rm BiRewire_3.18.0.tar.gz BiRewire_3.18.0.zip |
| StartedAt: 2020-04-14 18:52:09 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 18:52:44 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 34.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/BiRewire_3.18.0.tar.gz && rm -rf BiRewire.buildbin-libdir && mkdir BiRewire.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiRewire.buildbin-libdir BiRewire_3.18.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL BiRewire_3.18.0.zip && rm BiRewire_3.18.0.tar.gz BiRewire_3.18.0.zip
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install for i386
* installing *source* package 'BiRewire' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c BiRewire.c -o BiRewire.o
BiRewire.c: In function 'rewire_sparse':
BiRewire.c:1066:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
^
BiRewire.c: In function 'rewire_sparse_ex':
BiRewire.c:1149:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c interface.c -o interface.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o BiRewire.dll tmp.def BiRewire.o interface.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/BiRewire.buildbin-libdir/00LOCK-BiRewire/00new/BiRewire/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BiRewire'
finding HTML links ... done
BRCA_binary_matrix html
BiRewire-package html
birewire.analysis.bipartite html
finding level-2 HTML links ... done
birewire.analysis.dsg html
birewire.analysis.undirected html
birewire.bipartite.from.incidence html
birewire.build.dsg html
birewire.induced.bipartite html
birewire.load.dsg html
birewire.rewire.bipartite html
birewire.rewire.bipartite.and.projections
html
birewire.rewire.dsg html
birewire.rewire.undirected html
birewire.sampler.bipartite html
birewire.sampler.dsg html
birewire.sampler.undirected html
birewire.similarity html
birewire.similarity.dsg html
birewire.slum.to.sparseMatrix html
birewire.visual.monitoring.bipartite html
birewire.visual.monitoring.dsg html
birewire.visual.monitoring.undirected html
test_dsg html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'BiRewire' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c BiRewire.c -o BiRewire.o
BiRewire.c: In function 'rewire_sparse':
BiRewire.c:1066:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
^
BiRewire.c: In function 'rewire_sparse_ex':
BiRewire.c:1149:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c interface.c -o interface.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o BiRewire.dll tmp.def BiRewire.o interface.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/BiRewire.buildbin-libdir/BiRewire/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiRewire' as BiRewire_3.18.0.zip
* DONE (BiRewire)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'BiRewire' successfully unpacked and MD5 sums checked