Package: phenoTest

Version: 1.1.1

Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data phenoTest

StartedAt: 2011-07-06 23:00:30 -0700 (Wed, 06 Jul 2011)

EndedAt: 2011-07-06 23:01:00 -0700 (Wed, 06 Jul 2011)

EllapsedTime: 30.2 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

* checking for file ‘phenoTest/DESCRIPTION’ ... OK
* preparing ‘phenoTest’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
      -----------------------------------
* installing *source* package ‘phenoTest’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c getEs.c -o getEs.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o phenoTest.so getEs.o -L/home/biocbuild/bbs-2.9-bioc/R/lib -lR
installing to /tmp/RtmpA6FYV8/Rinst2046cc6e/phenoTest/libs
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  ‘browseVignettes()’. To cite Bioconductor, see
  ‘citation("Biobase")’ and for packages ‘citation("pkgname")’.

Loading required package: AnnotationDbi
Loading required package: DBI

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘phenoTest.Rnw’ 
** testing if installed package can be loaded
Error in namespaceExport(ns, exports) : 
  undefined exports: getEsPositions, findCopyNumber, genesInArea
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/RtmpA6FYV8/Rinst2046cc6e/phenoTest’
      -----------------------------------
ERROR: package installation failed