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Package 76/479HostnameOS / ArchBUILDCHECKBUILD BIN
Category 2.19.1
Biocore Team c/o BioC user list
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Category
Last Changed Rev: 56292 / Revision: 56603
Last Changed Date: 2011-06-17 18:53:47 -0700 (Fri, 17 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64 [ ERROR ] skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 
pitt Mac OS X Leopard (10.5.8) / i386  ERROR  skipped  skipped 

Summary

Package: Category
Version: 2.19.1
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Category
StartedAt: 2011-07-06 21:37:11 -0700 (Wed, 06 Jul 2011)
EndedAt: 2011-07-06 21:39:35 -0700 (Wed, 06 Jul 2011)
EllapsedTime: 144.7 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

* checking for file ‘Category/DESCRIPTION’ ... OK
* preparing ‘Category’:
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  ‘browseVignettes()’. To cite Bioconductor, see
  ‘citation("Biobase")’ and for packages ‘citation("pkgname")’.

Loading required package: AnnotationDbi
Loading required package: org.Hs.eg.db
Loading required package: DBI



Loading required package: oligoClasses
================================================================================
Welcome to oligoClasses version 1.15.9
================================================================================
Large dataset support for ‘oligo/crlmm’: Disabled
     - Load ‘ff’
================================================================================
Parallel computing support for ‘oligo/crlmm’: Disabled
     - Load ‘ff’
     - Load ‘snow’
     - Use options(cluster=makeCluster(...))
================================================================================
Welcome to SNPchip version 1.17.0
Loading required package: lattice
Warning: unexpected band notation: Xq13.3-Xq21.2 using Xq
Warning: unexpected band notation: Xq13.3-Xq21.2 using Xq
Warning: unexpected band notation: Xq13.3-Xq21.2 using Xq
Warning: unexpected band notation: Xq13.3-Xq21.2 using Xq

Error: processing vignette ‘ChromBand.Rnw’ failed with diagnostics:
 chunk 20 (label = LMtest) 
Error in is.function(FUN) : ‘FUN’ is missing
Execution halted