Package: GeneRegionScan

Version: 1.0.0

Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD build GeneRegionScan

StartedAt: 2009-10-20 14:59:29 -0700 (Tue, 20 Oct 2009)

EndedAt: 2009-10-20 15:00:30 -0700 (Tue, 20 Oct 2009)

EllapsedTime: 61.4 seconds

RetCode: 0

Status: OK

PackageFile: GeneRegionScan_1.0.0.tar.gz

PackageFileSize: 3.77 MiB

* checking for file 'GeneRegionScan/DESCRIPTION' ... OK
* preparing 'GeneRegionScan':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'GeneRegionScan' ...
** R
** data
** exec
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: IRanges

Attaching package: 'IRanges'


	The following object(s) are masked from package:base :

	 cbind,
	 duplicated,
	 order,
	 pmax,
	 pmax.int,
	 pmin,
	 pmin.int,
	 rank,
	 rbind,
	 rep.int,
	 sapply,
	 sort,
	 table,
	 unique 

** help
*** installing help indices
 >>> Building/Updating help pages for package 'GeneRegionScan'
     Formats: text html latex example 
  Nondocumented-objects             text    html    latex
  ProbeLevelSet-class               text    html    latex
  addSnpPdata                       text    html    latex   example
  checkForFileInPath                text    html    latex   example
  doProbeLinear                     text    html    latex   example
  doProbeTTest                      text    html    latex   example
  exampleProbeLevelSet              text    html    latex   example
  excludeDoubleMatchingProbes       text    html    latex   example
  exonStructure                     text    html    latex   example
  findSequenceInGenome              text    html    latex   example
  geneRegionScan                    text    html    latex   example
  genomic                           text    html    latex
  getLocalMetaprobeIntensities      text    html    latex   example
  getLocalProbeIntensities          text    html    latex   example
  getMetaprobesetsFromRegionOfInter text    html    latex   example
  getProbeLevelAnnotationForExonArr text    html    latex   example
  getProbesetsFromRegionOfInterest  text    html    latex   example
  getSequence                       text    html    latex   example
  getServerProbeIntensities         text    html    latex   example
  mrna                              text    html    latex
  plotCoexpression                  text    html    latex   example
  plotOnGene                        text    html    latex   example
  plotStatistics                    text    html    latex
  readGeneInput                     text    html    latex   example
  translateSampleNames              text    html    latex   example
** building package indices ...
* DONE (GeneRegionScan)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'GeneRegionScan_1.0.0.tar.gz'