simulatorAPMS 1.12.0 Tony Chiang
 | Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008) |  | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/simulatorAPMS |  | Last Changed Rev: 31430 / Revision: 33132 |  | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |  
  | lamb1  | Linux (SUSE 10.1) / x86_64  |  OK  |  OK  |  | 
| wilson2  | Linux (openSUSE 10.3) / x86_64  |  OK  |  OK  |  | 
| wellington  | Linux (openSUSE 10.3) / i686  |  OK  |  OK  |  | 
| liverpool  | Windows Server 2003 R2 (32-bit) / x64  |  OK  | [ OK ] |  OK  | 
| pitt  | Mac OS X Tiger (10.4.11) / i386  |  OK  |  OK  |  OK  | 
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/simulatorAPMS.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ISO8859-1
* checking for file 'simulatorAPMS/DESCRIPTION' ... OK
* this is package 'simulatorAPMS' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'simulatorAPMS' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating simulatorAPMS-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating simulatorAPMS-manual.tex ... OK
* checking simulatorAPMS-manual.tex using pdflatex ... OK
 
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/simulatorAPMS.Rcheck
---------- Making package simulatorAPMS ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \details
Note: unmatched right brace in file 'filteredProt.Rd' on or after line 14
Note: unmatched right brace in file 'filteredProt.Rd' on or after line 14
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \source
Note: removing empty section \details
Note: removing empty section \references
 >>> Building/Updating help pages for package 'simulatorAPMS'
     Formats: text html latex example chm 
  APComEX                           text    html    latex   example chm
  PPIEX                             text    html    latex   example chm
  TSNMatrix                         text    html    latex   example chm
  applyDeformationError             text    html    latex   example chm
  applyFNErrors                     text    html    latex   example chm
  applyFPErrors                     text    html    latex   example chm
  applyStickyError                  text    html    latex   example chm
  compIndep                         text    html    latex   example chm
  filteredProt                      text    html    latex   example chm
  fullSimEX                         text    html    latex   example chm
  missedProtEX                      text    html    latex   example chm
  missedProtHMSPCI                  text    html    latex   example chm
  recordSticky                      text    html    latex   example chm
  runAPComplex                      text    html    latex   example chm
  runCompIndep                      text    html    latex   example chm
  runSimEX                          text    html    latex   example chm
  runSimulators                     text    html    latex   example chm
  simEX                             text    html    latex   example chm
  simulator                         text    html    latex   example chm
  simulatorD                        text    html    latex   example chm
  simulatorS                        text    html    latex   example chm
  vBaits                            text    html    latex   example chm
  vBaitsEX                          text    html    latex   example chm
  vDeformEX                         text    html    latex   example chm
  vDeformed                         text    html    latex   example chm
  vDeformedEX                       text    html    latex   example chm
  vStickyEX                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\simulatorAPMS.Rcheck\00_pkg_src\simulatorAPMS\chm\simulatorAPMS.chm
Compile time: 0 minutes, 0 seconds
28	Topics
78	Local links
0	Internet links
1	Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\simulatorAPMS.Rcheck\00_pkg_src\simulatorAPMS\chm\simulatorAPMS.chm, 36,594 bytes
Compression decreased file by 29,656 bytes.
  adding MD5 sums
* DONE (simulatorAPMS)