BioC experimental data: CHECK report for miRNATarget on zin1

Package: miRNATarget

Version: 1.1.2

Command: /home/biocbuild/bbs-2.13-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_1.1.2.tar.gz

StartedAt: 2014-04-04 09:30:44 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 09:31:38 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 54.9 seconds

RetCode: 0

Status:  OK

CheckDir: miRNATarget.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.13-data-experiment/meat/miRNATarget.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.1.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... [2s/2s] OK
* checking installed package size ... NOTE
  installed size is 23.1Mb
  sub-directories of 1Mb or more:
    data  22.7Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [22s/22s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.13-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNATarget)

name	user	system	elapsed
HS_conv_id	0.024	0.000	0.023
HS_refseq_to_affy_hc_g110	0.008	0.000	0.010
HS_refseq_to_affy_hg_focus	0.032	0.004	0.035
HS_refseq_to_affy_hg_u133_plus_2	0.172	0.000	0.170
HS_refseq_to_affy_hg_u133a	0.072	0.004	0.073
HS_refseq_to_affy_hg_u133a_2	0.072	0.000	0.070
HS_refseq_to_affy_hg_u133b	0.040	0.004	0.042
HS_refseq_to_affy_hg_u95a	0.048	0.000	0.048
HS_refseq_to_affy_hg_u95av2	0.048	0.000	0.049
HS_refseq_to_affy_hg_u95b	0.028	0.000	0.031
HS_refseq_to_affy_hg_u95c	0.024	0.000	0.025
HS_refseq_to_affy_hg_u95d	0.020	0.000	0.016
HS_refseq_to_affy_hg_u95e	0.012	0.004	0.018
HS_refseq_to_affy_huex_1_0_st_v2	1.680	0.048	1.730
HS_refseq_to_affy_hugene_1_0_st_v1	0.084	0.000	0.086
HS_refseq_to_affy_hugenefl	0.028	0.000	0.027
HS_refseq_to_affy_u133_x3p	0.132	0.004	0.133
HS_refseq_to_agilent_cgh_44b	0.052	0.000	0.051
HS_refseq_to_agilent_wholegenome	0.084	0.000	0.084
HS_refseq_to_canonical_transcript_stable_id	0.080	0.000	0.082
HS_refseq_to_ccds	0.060	0.000	0.062
HS_refseq_to_codelink	0.072	0.000	0.071
HS_refseq_to_embl	0.408	0.008	0.415
HS_refseq_to_ensembl_gene_id	0.1	0.0	0.1
HS_refseq_to_ensembl_peptide_id	0.120	0.004	0.127
HS_refseq_to_ensembl_transcript_id	0.132	0.000	0.132
HS_refseq_to_entrezgene	0.100	0.000	0.101
HS_refseq_to_hgnc_id	0.096	0.000	0.095
HS_refseq_to_hgnc_symbol	0.124	0.000	0.124
HS_refseq_to_hgnc_transcript_name	0.104	0.004	0.107
HS_refseq_to_illumina_humanht_12	0.1	0.0	0.1
HS_refseq_to_illumina_humanwg_6_v1	0.080	0.004	0.084
HS_refseq_to_illumina_humanwg_6_v2	0.084	0.000	0.082
HS_refseq_to_illumina_humanwg_6_v3	0.116	0.000	0.119
HS_refseq_to_interpro	0.176	0.004	0.181
HS_refseq_to_ipi	0.148	0.008	0.156
HS_refseq_to_merops	0.004	0.000	0.007
HS_refseq_to_pdb	0.072	0.000	0.071
HS_refseq_to_pfam	0.084	0.000	0.083
HS_refseq_to_phalanx_onearray	0.104	0.000	0.106
HS_refseq_to_protein_id	0.388	0.012	0.400
HS_refseq_to_refseq_dna	0.204	0.004	0.209
HS_refseq_to_refseq_genomic	0.000	0.000	0.002
HS_refseq_to_refseq_peptide	0.092	0.000	0.096
HS_refseq_to_rfam	0.000	0.004	0.004
HS_refseq_to_rfam_gene_name	0.012	0.000	0.008
HS_refseq_to_rfam_transcript_name	0.004	0.004	0.010
HS_refseq_to_smart	0.052	0.000	0.052
HS_refseq_to_tigrfam	0.008	0.000	0.007
HS_refseq_to_ucsc	0.088	0.000	0.089
HS_refseq_to_unigene	0.096	0.004	0.100
HS_refseq_to_uniprot_genename	0.108	0.008	0.114
HS_refseq_to_wikigene_name	0.084	0.000	0.084
MM_conv_id	0.084	0.000	0.082
MM_refseq_to_affy_mg_u74a	0.028	0.000	0.027
MM_refseq_to_affy_mg_u74av2	0.028	0.000	0.029
MM_refseq_to_affy_mg_u74b	0.020	0.000	0.021
MM_refseq_to_affy_mg_u74bv2	0.028	0.000	0.031
MM_refseq_to_affy_mg_u74c	0.008	0.004	0.015
MM_refseq_to_affy_mg_u74cv2	0.012	0.000	0.011
MM_refseq_to_affy_moe430a	0.056	0.000	0.056
MM_refseq_to_affy_moe430b	0.020	0.004	0.026
MM_refseq_to_affy_moex_1_0_st_v1	0.728	0.020	0.752
MM_refseq_to_affy_mogene_1_0_st_v1	0.088	0.000	0.086
MM_refseq_to_affy_mouse430_2	0.072	0.000	0.075
MM_refseq_to_affy_mouse430a_2	0.060	0.004	0.066
MM_refseq_to_affy_mu11ksuba	0.032	0.000	0.029
MM_refseq_to_affy_mu11ksubb	0.020	0.004	0.026
MM_refseq_to_agilent_wholegenome	0.076	0.000	0.079
MM_refseq_to_canonical_transcript_stable_id	0.076	0.000	0.076
MM_refseq_to_ccds	0.064	0.000	0.066
MM_refseq_to_codelink	0.064	0.000	0.064
MM_refseq_to_embl	0.236	0.000	0.238
MM_refseq_to_ensembl_gene_id	0.06	0.00	0.06
MM_refseq_to_ensembl_peptide_id	0.06	0.00	0.06
MM_refseq_to_ensembl_transcript_id	0.06	0.00	0.06
MM_refseq_to_entrezgene	0.056	0.000	0.056
MM_refseq_to_fantom	0.076	0.000	0.077
MM_refseq_to_illumina_mousewg_6_v1	0.072	0.000	0.074
MM_refseq_to_illumina_mousewg_6_v2	0.080	0.000	0.081
MM_refseq_to_interpro	0.128	0.004	0.131
MM_refseq_to_ipi	0.096	0.000	0.095
MM_refseq_to_merops	0.02	0.00	0.02
MM_refseq_to_mgi_id	0.072	0.000	0.071
MM_refseq_to_mgi_symbol	0.072	0.000	0.073
MM_refseq_to_mgi_transcript_name	0.08	0.00	0.08
MM_refseq_to_pdb	0.008	0.000	0.006
MM_refseq_to_pfam	0.060	0.000	0.059
MM_refseq_to_phalanx_onearray	0.052	0.000	0.052
MM_refseq_to_protein_id	0.232	0.000	0.236
MM_refseq_to_refseq_dna	0.076	0.000	0.077
MM_refseq_to_refseq_peptide	0.096	0.000	0.095
MM_refseq_to_rfam	0.020	0.000	0.022
MM_refseq_to_rfam_gene_name	0.000	0.000	0.002
MM_refseq_to_rfam_transcript_name	0.004	0.000	0.003
MM_refseq_to_smart	0.044	0.000	0.043
MM_refseq_to_tigrfam	0.008	0.000	0.005
MM_refseq_to_ucsc	0.08	0.00	0.08
MM_refseq_to_unigene	0.104	0.000	0.105
MM_refseq_to_uniprot_genename	0.108	0.000	0.108
MM_refseq_to_wikigene_name	0.064	0.004	0.068
TBL2	2.184	0.048	2.252
TBL2_HS	4.681	0.152	4.851
TBL2_MM	2.052	0.112	2.167
conv_id	0.000	0.004	0.006
id_conv	0.064	0.000	0.063