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BioC 2.13: BUILD BIN report for BAGS on perceval

This page was generated on 2014-04-05 09:52:47 -0700 (Sat, 05 Apr 2014).

Package 60/750HostnameOS / ArchBUILDCHECKBUILD BIN
BAGS 2.2.0
Alejandro Quiroz-Zarate
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/BAGS
Last Changed Rev: 81642 / Revision: 88450
Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: BAGS
Version: 2.2.0
Command: rm -rf BAGS.buildbin-libdir && mkdir BAGS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BAGS_2.2.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BAGS.buildbin-libdir
StartedAt: 2014-04-05 05:15:06 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 05:15:12 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 5.8 seconds
RetCode: 0
Status:  OK 
PackageFile: BAGS_2.2.0.tgz
PackageFileSize: 271.5 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BAGS.buildbin-libdir BAGS_2.2.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BAGS’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c BAGS.c -o BAGS.o
In file included from BAGS.c:8:
FuncionesFast-Final.h: In function ‘BetaFunCSDiff2’:
FuncionesFast-Final.h:145: warning: unused variable ‘YMu1’
FuncionesFast-Final.h: In function ‘AlfaFunCS’:
FuncionesFast-Final.h:166: warning: unused variable ‘MediaDiff’
FuncionesFast-Final.h:166: warning: unused variable ‘A’
FuncionesFast-Final.h:166: warning: unused variable ‘C’
BAGS.c: In function ‘Gibbs5’:
BAGS.c:25: warning: unused variable ‘resI’
BAGS.c:25: warning: unused variable ‘rate’
BAGS.c:25: warning: unused variable ‘escala’
BAGS.c:25: warning: unused variable ‘escala3’
BAGS.c:25: warning: unused variable ‘escala2’
BAGS.c:25: warning: unused variable ‘escala1’
BAGS.c:24: warning: unused variable ‘formaAux’
BAGS.c: In function ‘Gibbs4’:
BAGS.c:342: warning: unused variable ‘resI’
BAGS.c:342: warning: unused variable ‘rate’
BAGS.c:342: warning: unused variable ‘escala’
BAGS.c:342: warning: unused variable ‘escala3’
BAGS.c:342: warning: unused variable ‘escala2’
BAGS.c:342: warning: unused variable ‘escala1’
BAGS.c:341: warning: unused variable ‘formaAux’
BAGS.c: In function ‘Gibbs3’:
BAGS.c:593: warning: unused variable ‘resI’
BAGS.c:593: warning: unused variable ‘rate’
BAGS.c:593: warning: unused variable ‘escala’
BAGS.c:593: warning: unused variable ‘escala3’
BAGS.c:593: warning: unused variable ‘escala2’
BAGS.c:593: warning: unused variable ‘escala1’
BAGS.c:592: warning: unused variable ‘formaAux’
BAGS.c: In function ‘Gibbs2’:
BAGS.c:786: warning: unused variable ‘resI’
BAGS.c:786: warning: unused variable ‘rate’
BAGS.c:786: warning: unused variable ‘escala’
BAGS.c:786: warning: unused variable ‘escala3’
BAGS.c:786: warning: unused variable ‘escala2’
BAGS.c:786: warning: unused variable ‘escala1’
BAGS.c:785: warning: unused variable ‘formaAux’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o BAGS.so BAGS.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.13-bioc/meat/BAGS.buildbin-libdir/BAGS/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BAGS)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BAGS.buildbin-libdir/BAGS/libs//BAGS.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "BAGS.buildbin-libdir/BAGS/libs//BAGS.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "BAGS.buildbin-libdir/BAGS/libs//BAGS.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "BAGS.buildbin-libdir/BAGS/libs//BAGS.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "BAGS.buildbin-libdir/BAGS/libs//BAGS.so"