Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R [S] T  U  V  W  X  Y  Z 

BioC 2.12: BUILD BIN report for SamSPECTRAL on petty

This page was generated on 2013-10-09 09:39:50 -0700 (Wed, 09 Oct 2013).

Package 582/671HostnameOS / ArchBUILDCHECKBUILD BIN
SamSPECTRAL 1.14.1
Habil Zare
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/SamSPECTRAL
Last Changed Rev: 75509 / Revision: 81334
Last Changed Date: 2013-04-10 10:14:28 -0700 (Wed, 10 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: SamSPECTRAL
Version: 1.14.1
Command: rm -rf SamSPECTRAL.buildbin-libdir && mkdir SamSPECTRAL.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SamSPECTRAL_1.14.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SamSPECTRAL.buildbin-libdir
StartedAt: 2013-10-09 01:04:44 -0700 (Wed, 09 Oct 2013)
EndedAt: 2013-10-09 01:04:55 -0700 (Wed, 09 Oct 2013)
EllapsedTime: 11.2 seconds
RetCode: 0
Status:  OK 
PackageFile: SamSPECTRAL_1.14.1.tgz
PackageFileSize: 759.9 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SamSPECTRAL.buildbin-libdir SamSPECTRAL_1.14.1.tar.gz'
>>>>>>> 

* installing *source* package 'SamSPECTRAL' ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c Rinit.c -o Rinit.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c conductance_computation.c -o conductance_computation.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c maximum_of_rows.c -o maximum_of_rows.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o SamSPECTRAL.so Rinit.o conductance_computation.o maximum_of_rows.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: ignoring .First.lib() for package 'SamSPECTRAL'
* DONE (SamSPECTRAL)


>>>>>>> 
>>>>>>> FIXING LINKS FOR SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs//SamSPECTRAL.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs//SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs//SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs//SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs//SamSPECTRAL.so"