BioC 2.12: CHECK report for PWMEnrich on moscato2

Package: PWMEnrich

Version: 2.2.0

Command: rm -rf PWMEnrich.buildbin-libdir && mkdir PWMEnrich.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=PWMEnrich.buildbin-libdir PWMEnrich_2.2.0.tar.gz >PWMEnrich-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=PWMEnrich.buildbin-libdir --install="check:PWMEnrich-install.out" --force-multiarch --no-vignettes --timings PWMEnrich_2.2.0.tar.gz && mv PWMEnrich.buildbin-libdir/* PWMEnrich.Rcheck/ && rmdir PWMEnrich.buildbin-libdir

StartedAt: 2013-10-09 03:41:50 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 03:46:28 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 277.5 seconds

RetCode: 0

Status:  OK

CheckDir: PWMEnrich.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/PWMEnrich.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PWMEnrich/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PWMEnrich' version '2.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PWMEnrich' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [47s] OK
Examples with CPU or elapsed time > 5s
                                                                 user system
motifEnrichment                                                  8.64   0.01
motifScores                                                      8.46   0.00
PFMtoPWM                                                         5.90   0.23
motifDiffEnrichment                                              5.28   0.00
motifRankingForSequence-comma-MotifEnrichmentResults-dash-method 5.07   0.03
                                                                 elapsed
motifEnrichment                                                     8.75
motifScores                                                         8.46
PFMtoPWM                                                            7.18
motifDiffEnrichment                                                 5.39
motifRankingForSequence-comma-MotifEnrichmentResults-dash-method    5.10
** running examples for arch 'x64' ... [51s] OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
motifEnrichment     9.81   0.02    9.82
motifScores         9.17   0.01    9.51
PFMtoPWM            7.33   0.39    7.73
motifDiffEnrichment 5.92   0.01    5.93
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'test-all.R' [10s]
 [10s] OK
** running tests for arch 'x64'
  Running 'test-all.R' [12s]
 [12s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'PWMEnrich' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'PWMEnrich' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PWMEnrich' as PWMEnrich_2.2.0.zip
* DONE (PWMEnrich)