BicARE 1.18.0
Pierre Gestraud
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/BicARE | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BicARE.buildbin-libdir BicARE_1.18.0.tar.gz'
>>>>>>>
* installing *source* package 'BicARE' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c BicARE.c -o BicARE.o
BicARE.c:126:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
nrowBic = vecResvolBic[z * 4 + 2];
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
BicARE.c:127:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
ncolBic = vecResvolBic[z * 4 + 3];
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
BicARE.c:280:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
nrowBic = vecResvolBic[z * 4 + 2];
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
BicARE.c:281:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
ncolBic = vecResvolBic[z * 4 + 3];
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
BicARE.c:282:15: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
volBic = vecResvolBic[z * 4 + 1];
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
BicARE.c:426:35: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
int *bicRow2 =(int *) R_alloc((long)(*k * *nrowData), sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
BicARE.c:427:36: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
int *bicCol2 = (int *) R_alloc((long)(*k * *ncolData), sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
BicARE.c:428:37: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
int *vecOrder = (int *) R_alloc((long)(total), sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
BicARE.c:429:46: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *vecBestGain = (double *) R_alloc((long)(total), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
BicARE.c:430:39: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
int *vecBestBic = (int *) R_alloc((long)(total), sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
BicARE.c:431:41: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *sumRow = (double *) R_alloc((long)(*k * *nrowData), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
BicARE.c:432:41: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *sumCol = (double *) R_alloc((long)(*k * *ncolData), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
BicARE.c:433:41: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *sumBic = (double *) R_alloc((long)(*k), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
BicARE.c:434:42: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *sumRow2 = (double *) R_alloc((long)(*k * *nrowData), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
BicARE.c:435:42: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *sumCol2 = (double *) R_alloc((long)(*k * *ncolData), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
BicARE.c:436:42: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *sumBic2 = (double *) R_alloc((long)(*k), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
BicARE.c:441:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(bicRow2, bicRow, *k * *nrowData * sizeof(int));
˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest)) \
^
BicARE.c:441:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(bicRow2, bicRow, *k * *nrowData * sizeof(int));
˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
: __inline_memcpy_chk (dest, src, len))
^
BicARE.c:442:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(bicCol2, bicCol, *k * *ncolData * sizeof(int));
˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
/usr/include/secure/_string.h:52:41: note: expanded from macro 'memcpy'
? __builtin___memcpy_chk (dest, src, len, __darwin_obsz0 (dest)) \
^
BicARE.c:442:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(bicCol2, bicCol, *k * *ncolData * sizeof(int));
˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
/usr/include/secure/_string.h:53:38: note: expanded from macro 'memcpy'
: __inline_memcpy_chk (dest, src, len))
^
BicARE.c:439:12: warning: unused variable 'invk' [-Wunused-variable]
double invk = 1/(double)*k;
^
BicARE.c:501:41: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *sumRow = (double *) R_alloc((long)(*nrowData), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
BicARE.c:502:41: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *sumCol = (double *) R_alloc((long)(*ncolData), sizeof(double));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
23 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o BicARE.so BicARE.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/BicARE.buildbin-libdir/BicARE/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BicARE)
>>>>>>>
>>>>>>> FIXING LINKS FOR BicARE.buildbin-libdir/BicARE/libs//BicARE.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "BicARE.buildbin-libdir/BicARE/libs//BicARE.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "BicARE.buildbin-libdir/BicARE/libs//BicARE.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "BicARE.buildbin-libdir/BicARE/libs//BicARE.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "BicARE.buildbin-libdir/BicARE/libs//BicARE.so"