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BioC 2.12: BUILD report for BSgenome on moscato2

This page was generated on 2013-10-09 09:38:17 -0700 (Wed, 09 Oct 2013).

Package 89/671HostnameOS / ArchBUILDCHECKBUILD BIN
BSgenome 1.28.0
H. Pages
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/BSgenome
Last Changed Rev: 75263 / Revision: 81334
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  WARNINGS 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  WARNINGS  OK 

Summary

Package: BSgenome
Version: 1.28.0
Command: chmod a+r BSgenome -R && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BSgenome
StartedAt: 2013-10-08 23:34:58 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 23:36:42 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 104.5 seconds
RetCode: 0
Status:  OK  
PackageFile: BSgenome_1.28.0.tar.gz
PackageFileSize: 493.4 KiB

Command output

* checking for file 'BSgenome/DESCRIPTION' ... OK
* preparing 'BSgenome':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory 'BSgenome/inst/BSgenomeDataPkg-template/inst/extdata' is empty
WARNING: directory 'BSgenome/tests/unit' is empty
* building 'BSgenome_1.28.0.tar.gz'
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'BSgenome/inst/extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-tools/split_human_b36_female.sh'