Package: miRNATarget

Version: 0.99.2

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch miRNATarget_0.99.2.tar.gz

StartedAt: 2013-03-24 12:20:30 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 12:21:54 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 84.1 seconds

RetCode: 0

Status:  OK

CheckDir: miRNATarget.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.11-data-experiment/meat/miRNATarget.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'miRNATarget/DESCRIPTION' ... OK
* this is package 'miRNATarget' version '0.99.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'miRNATarget' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 23.0Mb
  sub-directories of 1Mb or more:
    data  22.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
         user system elapsed
TBL2_HS 5.145   0.36   5.557
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.11-data-experiment/meat/miRNATarget.Rcheck/00check.log'
for details.

* installing *source* package 'miRNATarget' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
   'miRNATarget.Rnw' 
** testing if installed package can be loaded

* DONE (miRNATarget)

name	user	system	elapsed
HS_conv_id	0.025	0.006	0.058
HS_refseq_to_affy_hc_g110	0.011	0.001	0.084
HS_refseq_to_affy_hg_focus	0.045	0.003	0.050
HS_refseq_to_affy_hg_u133_plus_2	0.174	0.013	0.197
HS_refseq_to_affy_hg_u133a	0.094	0.005	0.100
HS_refseq_to_affy_hg_u133a_2	0.095	0.005	0.101
HS_refseq_to_affy_hg_u133b	0.048	0.003	0.051
HS_refseq_to_affy_hg_u95a	0.060	0.005	0.066
HS_refseq_to_affy_hg_u95av2	0.059	0.004	0.064
HS_refseq_to_affy_hg_u95b	0.035	0.003	0.039
HS_refseq_to_affy_hg_u95c	0.028	0.003	0.033
HS_refseq_to_affy_hg_u95d	0.015	0.002	0.020
HS_refseq_to_affy_hg_u95e	0.026	0.002	0.028
HS_refseq_to_affy_huex_1_0_st_v2	2.962	0.126	3.248
HS_refseq_to_affy_hugene_1_0_st_v1	0.119	0.008	0.134
HS_refseq_to_affy_hugenefl	0.038	0.003	0.041
HS_refseq_to_affy_u133_x3p	0.388	0.017	0.413
HS_refseq_to_agilent_cgh_44b	0.030	0.003	0.036
HS_refseq_to_agilent_wholegenome	0.116	0.008	0.130
HS_refseq_to_canonical_transcript_stable_id	0.110	0.007	0.126
HS_refseq_to_ccds	0.082	0.005	0.096
HS_refseq_to_codelink	0.096	0.006	0.161
HS_refseq_to_embl	0.523	0.023	0.569
HS_refseq_to_ensembl_gene_id	0.107	0.006	0.122
HS_refseq_to_ensembl_peptide_id	0.138	0.008	0.151
HS_refseq_to_ensembl_transcript_id	0.149	0.008	0.184
HS_refseq_to_entrezgene	0.102	0.004	0.109
HS_refseq_to_hgnc_id	0.098	0.006	0.122
HS_refseq_to_hgnc_symbol	0.101	0.005	0.115
HS_refseq_to_hgnc_transcript_name	0.143	0.007	0.175
HS_refseq_to_illumina_humanht_12	0.135	0.006	0.146
HS_refseq_to_illumina_humanwg_6_v1	0.109	0.004	0.115
HS_refseq_to_illumina_humanwg_6_v2	0.105	0.006	0.115
HS_refseq_to_illumina_humanwg_6_v3	0.130	0.007	0.139
HS_refseq_to_interpro	0.349	0.012	0.365
HS_refseq_to_ipi	0.180	0.008	0.191
HS_refseq_to_merops	0.006	0.002	0.008
HS_refseq_to_pdb	0.069	0.005	0.075
HS_refseq_to_pfam	0.108	0.006	0.115
HS_refseq_to_phalanx_onearray	0.110	0.006	0.120
HS_refseq_to_protein_id	0.493	0.025	0.554
HS_refseq_to_refseq_dna	0.104	0.005	0.113
HS_refseq_to_refseq_genomic	0.002	0.001	0.003
HS_refseq_to_refseq_peptide	0.143	0.009	0.164
HS_refseq_to_rfam	0.004	0.002	0.007
HS_refseq_to_rfam_gene_name	0.002	0.001	0.007
HS_refseq_to_rfam_transcript_name	0.002	0.001	0.003
HS_refseq_to_smart	0.075	0.005	0.086
HS_refseq_to_tigrfam	0.008	0.001	0.009
HS_refseq_to_ucsc	0.133	0.008	0.143
HS_refseq_to_unigene	0.276	0.010	0.289
HS_refseq_to_uniprot_genename	0.150	0.007	0.344
HS_refseq_to_wikigene_name	0.101	0.005	0.107
MM_conv_id	0.005	0.001	0.022
MM_refseq_to_affy_mg_u74a	0.040	0.003	0.043
MM_refseq_to_affy_mg_u74av2	0.039	0.003	0.043
MM_refseq_to_affy_mg_u74b	0.030	0.002	0.092
MM_refseq_to_affy_mg_u74bv2	0.030	0.002	0.032
MM_refseq_to_affy_mg_u74c	0.010	0.001	0.012
MM_refseq_to_affy_mg_u74cv2	0.014	0.001	0.018
MM_refseq_to_affy_moe430a	0.083	0.005	0.113
MM_refseq_to_affy_moe430b	0.292	0.005	0.301
MM_refseq_to_affy_moex_1_0_st_v1	1.682	0.069	1.873
MM_refseq_to_affy_mogene_1_0_st_v1	0.097	0.008	0.107
MM_refseq_to_affy_mouse430_2	0.109	0.005	0.125
MM_refseq_to_affy_mouse430a_2	0.075	0.004	0.084
MM_refseq_to_affy_mu11ksuba	0.025	0.002	0.032
MM_refseq_to_affy_mu11ksubb	0.018	0.002	0.030
MM_refseq_to_agilent_wholegenome	0.099	0.010	0.129
MM_refseq_to_canonical_transcript_stable_id	0.088	0.005	0.094
MM_refseq_to_ccds	0.069	0.004	0.074
MM_refseq_to_codelink	0.072	0.004	0.076
MM_refseq_to_embl	0.326	0.013	0.393
MM_refseq_to_ensembl_gene_id	0.199	0.009	0.212
MM_refseq_to_ensembl_peptide_id	0.086	0.007	0.096
MM_refseq_to_ensembl_transcript_id	0.094	0.008	0.109
MM_refseq_to_entrezgene	0.090	0.007	0.115
MM_refseq_to_fantom	0.122	0.007	0.142
MM_refseq_to_illumina_mousewg_6_v1	0.270	0.008	0.299
MM_refseq_to_illumina_mousewg_6_v2	0.122	0.008	0.136
MM_refseq_to_interpro	0.408	0.013	0.428
MM_refseq_to_ipi	0.116	0.007	0.125
MM_refseq_to_merops	0.005	0.001	0.008
MM_refseq_to_mgi_id	0.082	0.004	0.088
MM_refseq_to_mgi_symbol	0.084	0.004	0.088
MM_refseq_to_mgi_transcript_name	0.086	0.005	0.092
MM_refseq_to_pdb	0.008	0.001	0.010
MM_refseq_to_pfam	0.086	0.005	0.090
MM_refseq_to_phalanx_onearray	0.075	0.004	0.082
MM_refseq_to_protein_id	0.300	0.013	0.317
MM_refseq_to_refseq_dna	0.072	0.004	0.076
MM_refseq_to_refseq_peptide	0.090	0.004	0.095
MM_refseq_to_rfam	0.002	0.001	0.003
MM_refseq_to_rfam_gene_name	0.002	0.001	0.002
MM_refseq_to_rfam_transcript_name	0.001	0.000	0.002
MM_refseq_to_smart	0.054	0.003	0.057
MM_refseq_to_tigrfam	0.006	0.001	0.007
MM_refseq_to_ucsc	0.072	0.004	0.076
MM_refseq_to_unigene	0.109	0.005	0.116
MM_refseq_to_uniprot_genename	0.109	0.005	0.115
MM_refseq_to_wikigene_name	0.082	0.004	0.087
TBL2	2.577	0.169	2.830
TBL2_HS	5.145	0.360	5.557
TBL2_MM	2.673	0.274	3.241
conv_id	0.005	0.001	0.006
id_conv	0.082	0.004	0.090