| Back to the "Multiple platform build/check report" | A B C D [E] F G H I J K L M N O P Q R S T U V W X Y Z |
| Package 163/553 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
| EBImage 3.12.0 Gregoire Pau
| lamb2 | Linux (openSUSE 11.4) / x86_64 | OK | [ OK ] | |||||
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | |||||
| petty | Mac OS X Leopard (10.5.8) / i386 | N O T S U P P O R T E D | |||||||
| Package: EBImage |
| Version: 3.12.0 |
| Command: /home/biocbuild/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings EBImage_3.12.0.tar.gz |
| StartedAt: 2012-09-24 00:32:44 -0700 (Mon, 24 Sep 2012) |
| EndedAt: 2012-09-24 00:34:34 -0700 (Mon, 24 Sep 2012) |
| EllapsedTime: 110.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: EBImage.Rcheck |
| Warnings: 0 |
* using log directory ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/EBImage.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘EBImage/DESCRIPTION’ ... OK
* this is package ‘EBImage’ version ‘3.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘EBImage’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.3Mb
sub-directories of 1Mb or more:
doc 2.8Mb
images 1.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘EBImage/R/init.R’:
.onLoad calls:
cat(" : EBImage", packageDescription("EBImage", fields = "Version"), ":\n")
Package startup functions should use ‘packageStartupMessage’ to
generate messages.
See section ‘Good practice’ in ?.onAttach.
channel: warning in rgbImage(r = x, g = x, b = x): partial argument
match of 'r' to 'red'
channel: warning in rgbImage(r = x, g = x, b = x): partial argument
match of 'g' to 'green'
channel: warning in rgbImage(r = x, g = x, b = x): partial argument
match of 'b' to 'blue'
channel: warning in rgbImage(r = x): partial argument match of 'r' to
'red'
channel: warning in rgbImage(g = x): partial argument match of 'g' to
'green'
channel: warning in rgbImage(b = x): partial argument match of 'b' to
'blue'
filter2: warning in matrix(0, nr = dx[1], nc = dx[2]): partial argument
match of 'nr' to 'nrow'
filter2: warning in matrix(0, nr = dx[1], nc = dx[2]): partial argument
match of 'nc' to 'ncol'
floodFill: warning in matrix(as.integer(pt), nr = n, nc = 2, byrow =
TRUE): partial argument match of 'nr' to 'nrow'
floodFill: warning in matrix(as.integer(pt), nr = n, nc = 2, byrow =
TRUE): partial argument match of 'nc' to 'ncol'
floodFill: warning in matrix(col, nr = n, nc = 1): partial argument
match of 'nr' to 'nrow'
floodFill: warning in matrix(col, nr = n, nc = 1): partial argument
match of 'nc' to 'ncol'
ocontour : <anonymous>: warning in matrix(z, nc = 2, byrow = TRUE):
partial argument match of 'nc' to 'ncol'
tile: warning in Image(c(fg.col, bg.col), col = Color, dim = c(2, 1)):
partial argument match of 'col' to 'colormode'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
Running ‘test.R’
Comparing ‘test.Rout’ to ‘test.Rout.save’ ...5d4
< Xlib: extension "RANDR" missing on display ":12258.0".
19c18
< + passed = TRUE
---
> + passed=T
166c165
< checking 'blur' ... OK (hash=49934830)
---
> checking 'blur' ... OK (hash=49934617)
191c190
< checking 'paintObjects' ... OK (hash=43678131)
---
> checking 'paintObjects' ... OK (hash=55130488)
222c221
< checking 'resize' ... OK (hash=214938067)
---
> checking 'resize' ... OK (hash=214938068)
228c227
< checking 'blur' ... OK (hash=37689843)
---
> checking 'blur' ... OK (hash=37689383)
253c252
< checking 'paintObjects' ... OK (hash=27214353)
---
> checking 'paintObjects' ... OK (hash=38666710)
257a257,258
> 3: In approx(x[, 2], x[, 1], xout = xout, n = n) :
> collapsing to unique 'x' values
283c284
< checking 'resize' ... OK (hash=2890111650)
---
> checking 'resize' ... OK (hash=2890111652)
290c291
< checking 'blur' ... OK (hash=521370799)
---
> checking 'blur' ... OK (hash=521369852)
292c293
< checking 'normalize' ... OK (hash=491794302)
---
> checking 'normalize' ... OK (hash=491794301)
306,308c307,309
< checking 'combine' ... OK (hash=5214602768)
< checking 'tile' ... OK (hash=10701043689)
< checking 'untile' ... OK (hash=11514959135)
---
> checking 'combine' ... OK (hash=5214602765)
> checking 'tile' ... OK (hash=10701043688)
> checking 'untile' ... OK (hash=11514959132)
313c314
< checking 'paintObjects' ... OK (hash=482954590)
---
> checking 'paintObjects' ... OK (hash=529056647)
322c323
< new test (hash=2261534013)
---
> new test (hash=2261534012)
340c341
< checking '+' ... OK (hash=4036640155)
---
> checking '+' ... OK (hash=4036640154)
344,348c345,349
< checking 'resize' ... OK (hash=12489520656)
< checking 'rotate' ... OK (hash=3723760786)
< checking 'flip' ... OK (hash=2283205999)
< checking 'flop' ... OK (hash=2261305961)
< checking 'translate' ... OK (hash=2264769851)
---
> checking 'resize' ... OK (hash=12489520632)
> checking 'rotate' ... OK (hash=3723760783)
> checking 'flip' ... OK (hash=2283205998)
> checking 'flop' ... OK (hash=2261305960)
> checking 'translate' ... OK (hash=2264769850)
351,353c352,354
< checking 'blur' ... OK (hash=2254283914)
< checking 'gblur' ... OK (hash=2260575569)
< checking 'normalize' ... OK (hash=2118652725)
---
> checking 'blur' ... OK (hash=2254280360)
> checking 'gblur' ... OK (hash=2260575565)
> checking 'normalize' ... OK (hash=2118652724)
367,369c368,370
< checking 'combine' ... OK (hash=21363016027)
< checking 'tile' ... OK (hash=20144415193)
< checking 'untile' ... OK (hash=21061933761)
---
> checking 'combine' ... OK (hash=21363016015)
> checking 'tile' ... OK (hash=20144415189)
> checking 'untile' ... OK (hash=21061933752)
374c375
< checking 'paintObjects' ... OK (hash=2142970391)
---
> checking 'paintObjects' ... OK (hash=2299205033)
390c391
< checking 'resize' ... OK (hash=1132892631)
---
> checking 'resize' ... OK (hash=1132892630)
397c398
< checking 'blur' ... OK (hash=203673238)
---
> checking 'blur' ... OK (hash=203672584)
422c423
< checking 'paintObjects' ... OK (hash=178016825)
---
> checking 'paintObjects' ... OK (hash=224055747)
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
‘/loc/home/biocbuild/bbs-2.10-bioc/meat/EBImage.Rcheck/00check.log’
for details.
EBImage.Rcheck/00install.out:
* installing *source* package ‘EBImage’ ... checking for Magick-config... yes * found ImageMagick version 6.6.5 Q16 * found ImageMagick includes in -I/usr/include/ImageMagick checking for pkg-config... yes * compiling with GTK+ support ----------------------------------------------------- configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c EBImage.c -o EBImage.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c conversions.c -o conversions.o conversions.c: In function ‘magick2SEXP’: conversions.c:135:17: warning: ‘DispatchImage’ is deprecated (declared at /usr/include/ImageMagick/magick/deprecate.h:266) conversions.c:137:17: warning: ‘DispatchImage’ is deprecated (declared at /usr/include/ImageMagick/magick/deprecate.h:266) conversions.c:139:17: warning: ‘DispatchImage’ is deprecated (declared at /usr/include/ImageMagick/magick/deprecate.h:266) conversions.c:144:17: warning: ‘DispatchImage’ is deprecated (declared at /usr/include/ImageMagick/magick/deprecate.h:266) gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c display.c -o display.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c distmap.c -o distmap.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c drawable.c -o drawable.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c features_haralick.c -o features_haralick.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c features_hull.c -o features_hull.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c features_moments.c -o features_moments.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c features_zernike.c -o features_zernike.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c filters_magick.c -o filters_magick.o g++ -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c floodFill.cpp -o floodFill.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c io.c -o io.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c morphology.c -o morphology.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c normalize.c -o normalize.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c objects.c -o objects.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c ocontour.c -o ocontour.o g++ -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c propagate.cpp -o propagate.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c thresh.c -o thresh.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c tile.c -o tile.o tile.c: In function ‘untile’: tile.c:130:37: warning: unused variable ‘id’ gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c tools.c -o tools.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng14 -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c translate.c -o translate.o g++ -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG -I/usr/local/include -Wall -I/usr/include/ImageMagick -fopenmp -I/usr/include/ImageMagick -fpic -g -O2 -Wall -c watershed.cpp -o watershed.o g++ -shared -L/usr/local/lib64 -o EBImage.so EBImage.o conversions.o display.o distmap.o drawable.o features_haralick.o features_hull.o features_moments.o features_zernike.o filters_magick.o floodFill.o io.o morphology.o normalize.o objects.o ocontour.o propagate.o thresh.o tile.o tools.o translate.o watershed.o -pthread -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lm -lcairo -lpng14 -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0 -L/usr/lib64 -L/usr/lib64 -L/usr/lib64 -lMagickCore -llcms -ltiff -lfreetype -ljpeg -lfontconfig -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lm -lpthread -lltdl -L/usr/lib64 -lMagickWand -lMagickCore -llcms -ltiff -lfreetype -ljpeg -lfontconfig -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lm -lpthread -lltdl -L/home/biocbuild/bbs-2.10-bioc/R/lib -lR installing to /loc/home/biocbuild/bbs-2.10-bioc/meat/EBImage.Rcheck/EBImage/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘EBImage-installation.Rnw’ ‘EBImage-introduction.Rnw’ ** testing if installed package can be loaded Xlib: extension "RANDR" missing on display ":12258.0". * DONE (EBImage)
EBImage.Rcheck/EBImage-Ex.timings:
| name | user | system | elapsed | |
| EBImage | 11.012 | 0.160 | 7.113 | |
| Image | 0.904 | 0.020 | 0.631 | |
| blur | 0.880 | 0.016 | 0.459 | |
| bwlabel | 3.065 | 0.180 | 2.804 | |
| channel | 3.036 | 0.112 | 2.275 | |
| combine | 0.004 | 0.000 | 0.001 | |
| computeFeatures | 2.084 | 0.080 | 1.637 | |
| display | 4.308 | 0.100 | 2.261 | |
| distmap | 0.372 | 0.004 | 0.191 | |
| drawCircle | 0.144 | 0.000 | 0.096 | |
| drawable | 0.648 | 0.000 | 0.313 | |
| equalize | 0.536 | 0.000 | 0.256 | |
| feature-obsolete | 2.412 | 0.084 | 2.080 | |
| fillHull | 0.684 | 0.036 | 0.572 | |
| filter2 | 2.141 | 0.020 | 2.133 | |
| floodFill | 0.668 | 0.004 | 0.506 | |
| getFeatures | 1.948 | 0.028 | 1.778 | |
| io | 1.328 | 0.024 | 0.847 | |
| morphology | 0.156 | 0.000 | 0.107 | |
| normalize | 0.148 | 0.000 | 0.084 | |
| ocontour | 0.216 | 0.000 | 0.113 | |
| paintObjects | 4.620 | 0.252 | 4.405 | |
| propagate | 1.644 | 0.036 | 1.708 | |
| rmObjects | 0.396 | 0.004 | 0.195 | |
| spatial | 1.580 | 0.004 | 0.792 | |
| stackObjects | 8.045 | 1.276 | 8.831 | |
| thresh | 0.644 | 0.004 | 0.338 | |
| tile | 4.232 | 0.092 | 2.234 | |
| translate | 0.384 | 0.048 | 0.221 | |
| watershed | 0.444 | 0.016 | 0.228 | |