Package: ACME

Version: 1.2.1

Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check ACME_1.2.1.tar.gz

RetCode: 0

Time: 139.5 seconds

Status: OK

CheckDir: ACME.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.0-bioc/meat/ACME.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'ACME/DESCRIPTION' ... OK
* this is package 'ACME' version '1.2.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ACME' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating ACME-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ACME-manual.tex ... OK
* checking ACME-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.0-bioc/meat/ACME.Rcheck


---------- Making package ACME ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making windowChisq.d from windowChisq.c
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c windowChisq.c -o windowChisq.o
windowChisq.c: In function `windowChisq':
windowChisq.c:58: warning: suggest parentheses around comparison in operand of &
windowChisq.c:63: warning: suggest parentheses around comparison in operand of &
windowChisq.c:21: warning: unused variable `xa'
windowChisq.c: At top level:
windowChisq.c:86: warning: initialization from incompatible pointer type
windres -I d:/biocbld/bbs-2.0-bioc/R/include  -i ACME_res.rc -o ACME_res.o
gcc  -shared -s  -o ACME.dll ACME.def windowChisq.o ACME_res.o  -Ld:/biocbld/bbs-2.0-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'ACME'
     Formats: text html latex example chm 
  aGFF-class                        text    html    latex   example chm
  aGFFCalc-class                    text    html    latex   example chm
  do.aGFF.calc                      text    html    latex   example chm
  example.agff                      text    html    latex   example chm
  findClosestGene                   text    html    latex   example chm
  findRegions                       text    html    latex   example chm
  getRefflat                        text    html    latex   example chm
  read.resultsGFF                   text    html    latex   example chm
  write.sgr                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.0-bioc\meat\ACME.Rcheck\00_pkg_src\ACME\chm\ACME.chm


Compile time: 0 minutes, 0 seconds
10	Topics
33	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.0-bioc\meat\ACME.Rcheck\00_pkg_src\ACME\chm\ACME.chm, 26,455 bytes
Compression decreased file by 4,141 bytes.
  adding MD5 sums

* DONE (ACME)