Package: clusterStab

Version: 1.7.1

Command: /loc/biocbuild/2.0d/R/bin/R CMD check clusterStab_1.7.1.tar.gz

RetCode: 0

Time: 89.9 seconds

Status: WARNINGS

CheckDir: clusterStab.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/2.0d/Rpacks/clusterStab.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'clusterStab/DESCRIPTION' ... OK
* this is package 'clusterStab' version '1.7.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'clusterStab' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
  generic 'benhur' and siglist 'exprSet'
  generic 'clusterComp' and siglist 'exprSet'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating clusterStab-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating clusterStab-manual.tex ... OK
* checking clusterStab-manual.tex ... OK

WARNING: There was 1 warning, see
  /extra/loc/biocbuild/2.0d/Rpacks/clusterStab.Rcheck/00check.log
for details

* Installing *source* package 'clusterStab' ...
** R
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

[1] "benhur"
[1] "clusterComp"
[1] "benhur"
[1] "clusterComp"
[1] "hist"
[1] "ecdf"
[1] "benhur"
[1] "benhur"
[1] "benhur"
[1] "show"
[1] "hist"
[1] "ecdf"
[1] "clusterComp"
[1] "clusterComp"
[1] "clusterComp"
[1] "show"
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

** help
 >>> Building/Updating help pages for package 'clusterStab'
     Formats: text html latex example 
  benhur-class                      text    html    latex
  benhur                            text    html    latex   example
  clusterComp-class                 text    html    latex
  clusterComp                       text    html    latex   example
** building package indices ...
* DONE (clusterStab)