Package: makecdfenv

Version: 1.13.2

Command: E:\biocbld\2.0d\R\bin\R.exe CMD check makecdfenv_1.13.2.tar.gz

RetCode: 1

Time: 168.5 seconds

Status: ERROR

CheckDir: makecdfenv.Rcheck

Warnings: NA

* checking for working latex ... OK
* using log directory 'E:/biocbld/2.0d/Rpacks/makecdfenv.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'makecdfenv/DESCRIPTION' ... OK
* this is package 'makecdfenv' version '1.13.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'makecdfenv' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating makecdfenv-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating makecdfenv-manual.tex ... OK
* checking makecdfenv-manual.tex ... ERROR
LaTeX errors when creating DVI version.
This typically indicates Rd problems.

installing R.css in E:/biocbld/2.0d/Rpacks/makecdfenv.Rcheck


---------- Making package makecdfenv ------------

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************

  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making read_cdffile.d from read_cdffile.c
gcc  -Ie:/biocbld/2.0d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c read_cdffile.c -o read_cdffile.o
read_cdffile.c: In function `readQC':
read_cdffile.c:565: warning: unused variable `param_unit'
windres --include-dir e:/biocbld/2.0d/R/include  -i makecdfenv_res.rc -o makecdfenv_res.o
gcc  -shared -s  -o makecdfenv.dll makecdfenv.def read_cdffile.o makecdfenv_res.o  -Le:/biocbld/2.0d/R/bin -Le:/biocbld/2.0d/R/src/extra/zlib -lz   -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy
Loading required package: affyio
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'makecdfenv'
     Formats: text html latex example chm 
  Cdf-class                         text    html    latex           chm
  getInfoInAffyFile                 text    html    latex           chm
  make.cdf.env                      text    html    latex   example chm
  make.cdf.package                  text    html    latex   example chm
  pmormm                            text    html    latex           chm
  read.cdffile                      text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\2.0d\Rpacks\makecdfenv.Rcheck\00_pkg_src\makecdfenv\chm\makecdfenv.chm


Compile time: 0 minutes, 0 seconds
7	Topics
42	Local links
0	Internet links
1	Graphic


Created e:\biocbld\2.0d\Rpacks\makecdfenv.Rcheck\00_pkg_src\makecdfenv\chm\makecdfenv.chm, 26,735 bytes
Compression decreased file by 6,940 bytes.
  adding MD5 sums

* DONE (makecdfenv)