Package: aroma.light

Version: 1.3.0

Command: /home/biocbuild/2.0d/R/bin/R CMD check aroma.light_1.3.0.tar.gz

RetCode: 0

Time: 52.5 seconds

Status: WARNINGS

CheckDir: aroma.light.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/home/biocbuild/2.0d/Rpacks/aroma.light.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'aroma.light/DESCRIPTION' ... OK
* this is package 'aroma.light' version '1.3.0'
* checking package dependencies ... WARNING
'library' or 'require' calls not declared from:
  R.utils modreg
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'aroma.light' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating aroma.light-Ex.R ... OK
* checking examples ... OK
* creating aroma.light-manual.tex ... OK
* checking aroma.light-manual.tex ... OK

WARNING: There was 1 warning, see
  /home/biocbuild/2.0d/Rpacks/aroma.light.Rcheck/00check.log
for details

* Installing *source* package 'aroma.light' ...
** R
** inst
** preparing package for lazy loading
Loading required package: R.oo
R.oo v1.2.3 (2006-09-07) successfully loaded. See ?R.oo for help.
** help
 >>> Building/Updating help pages for package 'aroma.light'
     Formats: text html latex example 
  1._Calibration_and_Normalization  text    html    latex
  Non-documented_objects            text    html    latex
  aroma.light-package               text    html    latex
  averageQuantile.list              text    html    latex
  backtransformAffine.matrix        text    html    latex   example
  calibrateMultiscan.matrix         text    html    latex   example
  distanceBetweenLines              text    html    latex   example
  fitIWPCA.matrix                   text    html    latex
  iwpca.matrix                      text    html    latex   example
  likelihood.smooth.spline          text    html    latex   example
  medianPolish.matrix               text    html    latex   example
  normalizeAffine.matrix            text    html    latex   example
  normalizeCurveFit.matrix          text    html    latex   example
  normalizeQuantile.list            text    html    latex   example
  normalizeQuantile.matrix          text    html    latex   example
  normalizeQuantile.numeric         text    html    latex
  plotDensity.list                  text    html    latex
  plotMvsA.matrix                   text    html    latex
  plotMvsAPairs.matrix              text    html    latex
  plotMvsMPairs.matrix              text    html    latex
  print.SmoothSplineLikelihood      text    html    latex
  robustSmoothSpline                text    html    latex   example
  sampleCorrelations.matrix         text    html    latex   example
  sampleTuples                      text    html    latex   example
  weightedMedian                    text    html    latex   example
  wpca.matrix                       text    html    latex   example
** building package indices ...
* DONE (aroma.light)