Package: globaltest

Version: 4.5.1

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check globaltest_4.5.1.tar.gz

RetCode: 0

Time: 241.1 seconds

Status: WARNINGS

CheckDir: globaltest.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/Users/biocbuild/2.0d/Rpacks/globaltest.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-10-21 r39702)
* checking for file 'globaltest/DESCRIPTION' ... OK
* this is package 'globaltest' version '4.5.1'
* checking package dependencies ... WARNING
'library' or 'require' calls not declared from:
  GO
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'globaltest' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating globaltest-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating globaltest-manual.tex ... OK
* checking globaltest-manual.tex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/2.0d/Rpacks/globaltest.Rcheck/00check.log
for details

* Installing *source* package 'globaltest' ...
** R
** data
** inst
** save image
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: survival
Loading required package: splines
Creating a new generic function for "fitted.values" in "globaltest"
Creating a new generic function for "residuals" in "globaltest"
** preparing package for lazy loading
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: survival
Loading required package: splines
** help
 >>> Building/Updating help pages for package 'globaltest'
     Formats: text html latex example 
  GOstructure                       text    html    latex
  annotation.vandeVijver            text    html    latex
  checkerboard                      text    html    latex   example
  geneplot                          text    html    latex   example
  globaltest                        text    html    latex   example
  gostructure.vandeVijver           text    html    latex
  gt.barplot-class                  text    html    latex
  gt.result-class                   text    html    latex
  gtGO                              text    html    latex   example
  mlogit                            text    html    latex   example
  multtest                          text    html    latex   example
  permutations                      text    html    latex   example
  regressionplot                    text    html    latex   example
  sampleplot                        text    html    latex   example
  sampling                          text    html    latex   example
  vandeVijver                       text    html    latex
** building package indices ...
* DONE (globaltest)