CHECK report for externalVector on derby

* checking for working latex ... OK * using log directory '/Users/biocbuild/2.0d/Rpacks/externalVector.Rcheck' * using R version 2.5.0 Under development (unstable) (2006-10-21 r39702) * checking for file 'externalVector/DESCRIPTION' ... OK * this is package 'externalVector' version '1.5.1' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'externalVector' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: all any max min prod range sum Undocumented S4 methods: generic '[<-' and siglist 'indirectExternalVector,missing,missing,ANY' generic '[<-' and siglist 'indirectExternalVector,ANY,missing,ANY' generic '[<-' and siglist 'indirectExternalMatrix,missing,missing,ANY' generic '[<-' and siglist 'indirectExternalMatrix,ANY,ANY,ANY' generic 'dimnames<-' and siglist 'indirectExternalVector,ANY' generic 'dimnames<-' and siglist 'indirectExternalMatrix,ANY' generic 'initializeResource' and siglist 'nativeStorageMethods,ANY' generic 'initializeResource' and siglist 'externalStorage,ANY' generic 'names<-' and siglist 'indirectExternalMatrix,ANY' All user-level objects in a package (including S4 classes and methods) should have documentation entries. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable use of $BLAS_LIBS ... OK * creating externalVector-Ex.R ... OK * checking examples ... ERROR Running examples in 'externalVector-Ex.R' failed. The error most likely occurred in: > ### * asEach > > flush(stderr()); flush(stdout()) > > ### Name: asEach > ### Title: Coerce each element of an external vector to a particular type > ### Aliases: asEach asEach,ANY,character-method > ### Keywords: classes > > ### ** Examples > > x <- externalCharacter(4) Error in initializeResource(resource, ptr, size, type, ...) : Trying to call virtual method for "initializeResource" with signature resource = "nativeStorageMethods" Execution halted

* Installing *source* package 'externalVector' ... ** libs ** arch - i386 gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c allocator.c -o allocator.o /var/tmp//ccirNQYd.s:704:indirect jmp without `*' /var/tmp//ccirNQYd.s:719:indirect jmp without `*' /var/tmp//ccirNQYd.s:734:indirect jmp without `*' /var/tmp//ccirNQYd.s:749:indirect jmp without `*' /var/tmp//ccirNQYd.s:764:indirect jmp without `*' /var/tmp//ccirNQYd.s:779:indirect jmp without `*' /var/tmp//ccirNQYd.s:794:indirect jmp without `*' /var/tmp//ccirNQYd.s:809:indirect jmp without `*' /var/tmp//ccirNQYd.s:824:indirect jmp without `*' /var/tmp//ccirNQYd.s:839:indirect jmp without `*' /var/tmp//ccirNQYd.s:854:indirect jmp without `*' /var/tmp//ccirNQYd.s:869:indirect jmp without `*' /var/tmp//ccirNQYd.s:884:indirect jmp without `*' /var/tmp//ccirNQYd.s:903:indirect jmp without `*' /var/tmp//ccirNQYd.s:922:indirect jmp without `*' /var/tmp//ccirNQYd.s:937:indirect jmp without `*' /var/tmp//ccirNQYd.s:952:indirect jmp without `*' /var/tmp//ccirNQYd.s:967:indirect jmp without `*' /var/tmp//ccirNQYd.s:982:indirect jmp without `*' /var/tmp//ccirNQYd.s:1001:indirect jmp without `*' gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c arraySummary.c -o arraySummary.o /var/tmp//ccVHQvgS.s:1231:indirect jmp without `*' /var/tmp//ccVHQvgS.s:1246:indirect jmp without `*' /var/tmp//ccVHQvgS.s:1261:indirect jmp without `*' /var/tmp//ccVHQvgS.s:1276:indirect jmp without `*' /var/tmp//ccVHQvgS.s:1291:indirect jmp without `*' /var/tmp//ccVHQvgS.s:1306:indirect jmp without `*' /var/tmp//ccVHQvgS.s:1321:indirect jmp without `*' /var/tmp//ccVHQvgS.s:1336:indirect jmp without `*' /var/tmp//ccVHQvgS.s:1351:indirect jmp without `*' /var/tmp//ccVHQvgS.s:1366:indirect jmp without `*' /var/tmp//ccVHQvgS.s:1388:indirect jmp without `*' /var/tmp//ccVHQvgS.s:1403:indirect jmp without `*' /var/tmp//ccVHQvgS.s:1418:indirect jmp without `*' gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c coerce.c -o coerce.o /var/tmp//ccWTwfXo.s:1408:indirect jmp without `*' /var/tmp//ccWTwfXo.s:1423:indirect jmp without `*' /var/tmp//ccWTwfXo.s:1442:indirect jmp without `*' /var/tmp//ccWTwfXo.s:1457:indirect jmp without `*' /var/tmp//ccWTwfXo.s:1472:indirect jmp without `*' /var/tmp//ccWTwfXo.s:1487:indirect jmp without `*' /var/tmp//ccWTwfXo.s:1502:indirect jmp without `*' /var/tmp//ccWTwfXo.s:1517:indirect jmp without `*' /var/tmp//ccWTwfXo.s:1532:indirect jmp without `*' /var/tmp//ccWTwfXo.s:1547:indirect jmp without `*' /var/tmp//ccWTwfXo.s:1562:indirect jmp without `*' /var/tmp//ccWTwfXo.s:1577:indirect jmp without `*' /var/tmp//ccWTwfXo.s:1592:indirect jmp without `*' /var/tmp//ccWTwfXo.s:1611:indirect jmp without `*' /var/tmp//ccWTwfXo.s:1630:indirect jmp without `*' gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c externalVector.c -o externalVector.o /var/tmp//ccK66yTr.s:4137:indirect jmp without `*' /var/tmp//ccK66yTr.s:4152:indirect jmp without `*' /var/tmp//ccK66yTr.s:4167:indirect jmp without `*' /var/tmp//ccK66yTr.s:4182:indirect jmp without `*' /var/tmp//ccK66yTr.s:4197:indirect jmp without `*' /var/tmp//ccK66yTr.s:4216:indirect jmp without `*' /var/tmp//ccK66yTr.s:4231:indirect jmp without `*' /var/tmp//ccK66yTr.s:4246:indirect jmp without `*' /var/tmp//ccK66yTr.s:4261:indirect jmp without `*' /var/tmp//ccK66yTr.s:4283:indirect jmp without `*' /var/tmp//ccK66yTr.s:4302:indirect jmp without `*' /var/tmp//ccK66yTr.s:4321:indirect jmp without `*' /var/tmp//ccK66yTr.s:4336:indirect jmp without `*' /var/tmp//ccK66yTr.s:4351:indirect jmp without `*' /var/tmp//ccK66yTr.s:4366:indirect jmp without `*' /var/tmp//ccK66yTr.s:4381:indirect jmp without `*' /var/tmp//ccK66yTr.s:4396:indirect jmp without `*' /var/tmp//ccK66yTr.s:4411:indirect jmp without `*' /var/tmp//ccK66yTr.s:4426:indirect jmp without `*' /var/tmp//ccK66yTr.s:4441:indirect jmp without `*' /var/tmp//ccK66yTr.s:4460:indirect jmp without `*' /var/tmp//ccK66yTr.s:4479:indirect jmp without `*' /var/tmp//ccK66yTr.s:4494:indirect jmp without `*' /var/tmp//ccK66yTr.s:4509:indirect jmp without `*' /var/tmp//ccK66yTr.s:4524:indirect jmp without `*' /var/tmp//ccK66yTr.s:4539:indirect jmp without `*' /var/tmp//ccK66yTr.s:4554:indirect jmp without `*' /var/tmp//ccK66yTr.s:4573:indirect jmp without `*' /var/tmp//ccK66yTr.s:4588:indirect jmp without `*' /var/tmp//ccK66yTr.s:4607:indirect jmp without `*' /var/tmp//ccK66yTr.s:4626:indirect jmp without `*' /var/tmp//ccK66yTr.s:4641:indirect jmp without `*' /var/tmp//ccK66yTr.s:4656:indirect jmp without `*' /var/tmp//ccK66yTr.s:4678:indirect jmp without `*' /var/tmp//ccK66yTr.s:4693:indirect jmp without `*' /var/tmp//ccK66yTr.s:4708:indirect jmp without `*' /var/tmp//ccK66yTr.s:4723:indirect jmp without `*' /var/tmp//ccK66yTr.s:4738:indirect jmp without `*' /var/tmp//ccK66yTr.s:4753:indirect jmp without `*' /var/tmp//ccK66yTr.s:4768:indirect jmp without `*' /var/tmp//ccK66yTr.s:4783:indirect jmp without `*' /var/tmp//ccK66yTr.s:4798:indirect jmp without `*' /var/tmp//ccK66yTr.s:4813:indirect jmp without `*' /var/tmp//ccK66yTr.s:4828:indirect jmp without `*' /var/tmp//ccK66yTr.s:4843:indirect jmp without `*' /var/tmp//ccK66yTr.s:4858:indirect jmp without `*' gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c groups.c -o groups.o /var/tmp//ccgKh4h6.s:12155:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12170:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12189:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12204:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12219:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12234:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12249:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12268:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12290:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12305:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12327:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12342:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12364:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12383:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12398:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12413:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12432:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12447:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12462:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12477:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12492:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12514:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12529:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12544:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12566:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12581:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12596:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12611:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12630:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12645:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12664:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12686:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12708:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12723:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12738:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12753:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12768:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12783:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12798:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12817:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12832:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12851:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12870:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12885:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12900:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12915:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12930:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12958:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12973:indirect jmp without `*' /var/tmp//ccgKh4h6.s:12988:indirect jmp without `*' gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c math.c -o math.o /var/tmp//ccBx8xi2.s:1513:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1528:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1543:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1558:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1577:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1592:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1607:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1622:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1637:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1652:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1667:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1682:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1697:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1712:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1727:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1742:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1757:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1772:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1787:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1802:indirect jmp without `*' /var/tmp//ccBx8xi2.s:1821:indirect jmp without `*' gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c slice.c -o slice.o /var/tmp//ccz2U1jn.s:5330:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5349:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5368:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5383:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5398:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5417:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5432:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5447:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5462:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5481:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5496:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5511:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5526:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5541:indirect jmp without `*' 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/var/tmp//ccz2U1jn.s:5872:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5891:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5906:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5921:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5936:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5951:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5966:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5981:indirect jmp without `*' /var/tmp//ccz2U1jn.s:5996:indirect jmp without `*' /var/tmp//ccz2U1jn.s:6011:indirect jmp without `*' /var/tmp//ccz2U1jn.s:6026:indirect jmp without `*' /var/tmp//ccz2U1jn.s:6041:indirect jmp without `*' gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c storage.c -o storage.o /var/tmp//ccfUXlVL.s:13748:indirect jmp without `*' /var/tmp//ccfUXlVL.s:13763:indirect jmp without `*' /var/tmp//ccfUXlVL.s:13782:indirect jmp without `*' /var/tmp//ccfUXlVL.s:13797:indirect jmp without `*' /var/tmp//ccfUXlVL.s:13812:indirect jmp without `*' /var/tmp//ccfUXlVL.s:13827:indirect jmp without `*' /var/tmp//ccfUXlVL.s:13842:indirect jmp without `*' /var/tmp//ccfUXlVL.s:13857:indirect jmp without `*' /var/tmp//ccfUXlVL.s:13872:indirect jmp without `*' /var/tmp//ccfUXlVL.s:13887:indirect jmp without `*' /var/tmp//ccfUXlVL.s:13906:indirect jmp without `*' /var/tmp//ccfUXlVL.s:13921:indirect jmp without `*' /var/tmp//ccfUXlVL.s:13936:indirect jmp without `*' /var/tmp//ccfUXlVL.s:13951:indirect jmp without `*' /var/tmp//ccfUXlVL.s:13966:indirect jmp without `*' /var/tmp//ccfUXlVL.s:13981:indirect jmp without `*' /var/tmp//ccfUXlVL.s:14000:indirect jmp without `*' /var/tmp//ccfUXlVL.s:14015:indirect jmp without `*' /var/tmp//ccfUXlVL.s:14030:indirect jmp without `*' /var/tmp//ccfUXlVL.s:14045:indirect jmp without `*' /var/tmp//ccfUXlVL.s:14060:indirect jmp without `*' /var/tmp//ccfUXlVL.s:14075:indirect jmp without `*' 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/var/tmp//ccfUXlVL.s:14696:indirect jmp without `*' gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c subscript.c -o subscript.o /var/tmp//ccnsWiy4.s:2420:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2435:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2454:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2469:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2484:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2499:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2518:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2537:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2552:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2567:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2582:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2601:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2616:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2631:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2646:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2661:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2676:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2695:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2714:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2729:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2748:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2767:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2782:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2797:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2812:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2827:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2842:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2857:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2872:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2887:indirect jmp without `*' /var/tmp//ccnsWiy4.s:2902:indirect jmp without `*' gcc-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o externalVector.so allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o -F/Library/Frameworks/R.framework/.. -framework R ** arch - ppc gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c allocator.c -o allocator.o gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c arraySummary.c -o arraySummary.o gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c coerce.c -o coerce.o gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c externalVector.c -o externalVector.o gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c groups.c -o groups.o gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c math.c -o math.o gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c slice.c -o slice.o gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c storage.c -o storage.o gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c subscript.c -o subscript.o gcc-4.0 -arch ppc -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o externalVector.so allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o -F/Library/Frameworks/R.framework/.. -framework R ** R ** save image Creating a new generic function for "names" in "externalVector" Creating a new generic function for "names<-" in "externalVector" Creating a new generic function for "match" in "externalVector" Creating a new generic function for "as.vector" in "externalVector" Creating a new generic function for "as.logical" in "externalVector" Creating a new generic function for "as.numeric" in "externalVector" Creating a new generic function for "as.double" in "externalVector" Creating a new generic function for "as.single" in "externalVector" Creating a new generic function for "as.complex" in "externalVector" Creating a new generic function for "as.list" in "externalVector" Creating a new generic function for "as.matrix" in "externalVector" Creating a new generic function for "as.data.frame" in "externalVector" Creating a new generic function for "log" in "externalVector" Creating a new generic function for "apply" in "externalVector" Creating a new generic function for "lapply" in "externalVector" Creating a new generic function for "sapply" in "externalVector" Creating a new generic function for "mean" in "externalVector" Creating a new generic function for "median" in "externalVector" Creating a new generic function for "cov2cor" in "externalVector" ** help >>> Building/Updating help pages for package 'externalVector' Formats: text html latex example NAIndex-class text html latex SubscriptList text html latex example Subset text html latex allIndex-class text html latex allNA text html latex example allocators text html latex as.Rvector text html latex example asEach text html latex example defaultElement text html latex example exprMatrix-class text html latex externalAllocator-class text html latex externalMatrix text html latex example externalResource-class text html latex externalStorage-class text html latex externalVector-class text html latex externalVector text html latex example externalVectorWithStorage-class text html latex gcAllocator-class text html latex example getExternalStorage text html latex getNativeStorageMethods text html latex indirectExternalMatrix-class text html latex indirectExternalVector-class text html latex internalType text html latex makeSlice text html latex example matrixIndex-class text html latex nativeStorageMethods-class text html latex nativeStorageMethodsList-class text html latex nonSlotAttributes text html latex noneIndex-class text html latex positiveIndex-class text html latex rebind text html latex setDimNames text html latex setExternalStorageClass text html latex example setVirtualMethod text html latex example simpleStorage-class text html latex sliceIndex-class text html latex union-class text html latex var text html latex example vectorIndex-class text html latex ** building package indices ... * DONE (externalVector)

Package 59/208	OS	Arch	BUILD	CHECK	BUILD BIN
externalVector 1.5.1 Biocore Team	Linux (SUSE 9.2)	x86_64	OK	ERROR
	Linux (SUSE 10.1)	x86_64	OK	ERROR
	Linux (SUSE 9.2)	i686	OK	ERROR
	Solaris 2.9	sparc	OK	ERROR
	Windows Server 2003	x86_64	OK	ERROR	OK
	Windows Server 2003	NA	OK	ERROR	OK
	Mac OS X (10.4.6)	i686	OK	[ ERROR ]

externalVector

1.5.1

Command output