Package: externalVector

Version: 1.4.0

Command: /loc/biocbuild/1.8d/R/bin/R CMD check externalVector_1.4.0.tar.gz

RetCode: 0

Time: 219.3 seconds

Status: OK

CheckDir: externalVector.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/1.8d/Rpacks/externalVector.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'externalVector/DESCRIPTION' ... OK
* this is package 'externalVector' version '1.4.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'externalVector' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* creating externalVector-Ex.R ... OK
* checking examples ... OK
* creating externalVector-manual.tex ... OK
* checking externalVector-manual.tex ... OK

* Installing *source* package 'externalVector' ...
** libs
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c allocator.c -o allocator.o
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c arraySummary.c -o arraySummary.o
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c externalVector.c -o externalVector.o
externalVector.c:6: warning: `ScalarVector' defined but not used
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c groups.c -o groups.o
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c math.c -o math.o
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c slice.c -o slice.o
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c storage.c -o storage.o
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c subscript.c -o subscript.o
gcc -shared -L/usr/local/lib -o externalVector.so allocator.o arraySummary.o externalVector.o groups.o math.o slice.o storage.o subscript.o   
** R
** save image
Creating a new generic function for 'names' in 'externalVector'
Creating a new generic function for 'names<-' in 'externalVector'
Creating a new generic function for 'match' in 'externalVector'
Creating a new generic function for 'as.vector' in 'externalVector'
Creating a new generic function for 'as.logical' in 'externalVector'
Creating a new generic function for 'as.numeric' in 'externalVector'
Creating a new generic function for 'as.double' in 'externalVector'
Creating a new generic function for 'as.single' in 'externalVector'
Creating a new generic function for 'as.complex' in 'externalVector'
Creating a new generic function for 'as.list' in 'externalVector'
Creating a new generic function for 'as.matrix' in 'externalVector'
Creating a new generic function for 'as.data.frame' in 'externalVector'
Creating a new generic function for 'log' in 'externalVector'
Creating a new generic function for 'apply' in 'externalVector'
Creating a new generic function for 'lapply' in 'externalVector'
Creating a new generic function for 'sapply' in 'externalVector'
Creating a new generic function for 'mean' in 'externalVector'
Creating a new generic function for 'median' in 'externalVector'
Creating a new generic function for 'cov2cor' in 'externalVector'
** help
 >>> Building/Updating help pages for package 'externalVector'
     Formats: text html latex example 
  NAIndex-class                     text    html    latex
  SubscriptList                     text    html    latex   example
  Subset                            text    html    latex
  allIndex-class                    text    html    latex
  allNA                             text    html    latex   example
  allocators                        text    html    latex
  as.Rvector                        text    html    latex   example
  asEach                            text    html    latex   example
  defaultElement                    text    html    latex   example
  exprMatrix-class                  text    html    latex
  externalAllocator-class           text    html    latex
  externalMatrix                    text    html    latex   example
  externalResource-class            text    html    latex
  externalStorage-class             text    html    latex
  externalVector-class              text    html    latex
  externalVector                    text    html    latex   example
  externalVectorWithStorage-class   text    html    latex
  gcAllocator-class                 text    html    latex   example
  getExternalStorage                text    html    latex
  getNativeStorageMethods           text    html    latex
  indirectExternalMatrix-class      text    html    latex
  indirectExternalVector-class      text    html    latex
  internalType                      text    html    latex
  makeSlice                         text    html    latex   example
  matrixIndex-class                 text    html    latex
  nativeStorageMethods-class        text    html    latex
  nativeStorageMethodsList-class    text    html    latex
  nonSlotAttributes                 text    html    latex
  noneIndex-class                   text    html    latex
  positiveIndex-class               text    html    latex
  rebind                            text    html    latex
  setDimNames                       text    html    latex
  setExternalStorageClass           text    html    latex   example
  setVirtualMethod                  text    html    latex   example
  simpleStorage-class               text    html    latex
  sliceIndex-class                  text    html    latex
  union-class                       text    html    latex
  var                               text    html    latex   example
  vectorIndex-class                 text    html    latex
** building package indices ...
* DONE (externalVector)