Back to the "Multiple platform build/check report"
| Package 156/172 | OS | Arch | BUILD | CHECK | BUILD BIN |
snapCGH1.0.0Mike Smith | Linux (SUSE 9.2) | x86_64 | OK | OK | |
| Linux (SUSE 9.2) | i686 | OK | OK | ||
| Solaris 2.9 | sparc | OK | OK | ||
| Linux (SUSE 10.0) | x86_64 | OK | OK | ||
| Windows Server 2003 | x86_64 | OK | [ OK ] | OK |
| Package: snapCGH |
| Version: 1.0.0 |
| Command: D:\biocbld\1.8d\R\bin\R.exe CMD check snapCGH_1.0.0.tar.gz |
| RetCode: 0 |
| Time: 90.5 seconds |
| Status: OK |
| CheckDir: snapCGH.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory 'D:/biocbld/1.8d/Rpacks/snapCGH.Rcheck' * using Version 2.3.1 (2006-06-01) * checking for file 'snapCGH/DESCRIPTION' ... OK * this is package 'snapCGH' version '1.0.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'snapCGH' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking Rd files ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * creating snapCGH-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating snapCGH-manual.tex ... OK * checking snapCGH-manual.tex ... OK
snapCGH.Rcheck/00install.out:
installing R.css in D:/biocbld/1.8d/Rpacks/snapCGH.Rcheck
---------- Making package snapCGH ------------
adding build stamp to DESCRIPTION
making DLL ...
making optimizer.d from optimizer.c
gcc -Id:/biocbld/1.8d/R/include -Wall -O2 -c optimizer.c -o optimizer.o
windres --include-dir d:/biocbld/1.8d/R/include -i snapCGH_res.rc -o snapCGH_res.o
gcc -shared -s -o snapCGH.dll snapCGH.def optimizer.o snapCGH_res.o -Ld:/biocbld/1.8d/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
installing man source files
Warning messages:
1: incomplete final line found by readLines on './man/GEList.Rd'
2: incomplete final line found by readLines on './man/filter.Rd'
3: incomplete final line found by readLines on './man/find.param.four.Rd'
4: incomplete final line found by readLines on './man/find.param.two.Rd'
5: incomplete final line found by readLines on './man/fitBioHMM.Rd'
6: incomplete final line found by readLines on './man/removeByWeights.Rd'
7: incomplete final line found by readLines on './man/runDNAcopy.Rd'
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'snapCGH'
Formats: text html latex example chm
GEList text html latex chm
LargeDataObject text html latex example chm
SegList text html latex chm
Viterbi.five text html latex chm
Viterbi.four text html latex chm
Viterbi.three text html latex chm
Viterbi.two text html latex chm
cbind text html latex chm
chrominfo.Mb text html latex chm
computeSD text html latex chm
convert.output text html latex example chm
dim text html latex example chm
dimnames text html latex chm
filter text html latex chm
find.param.five text html latex chm
find.param.four text html latex chm
find.param.one text html latex chm
find.param.three text html latex chm
find.param.two text html latex chm
findAberrations text html latex chm
findAmplifications text html latex chm
findBreakPoints text html latex example chm
findGenomicEvents text html latex chm
findOutliers text html latex chm
findTranslocations text html latex chm
fit.model text html latex chm
fitBioHMM text html latex chm
fitHMM text html latex chm
fractionAltered text html latex chm
genomePlot text html latex example chm
heatmapGenome text html latex example chm
impute.lowess text html latex example chm
log2ratios text html latex chm
mergeStates text html latex chm
mod.chrominfo text html latex chm
non.zero.length.distr.non.tiled text html latex chm
non.zero.length.distr.tiled text html latex chm
plotGainLoss text html latex example chm
plotSegmentationStates text html latex example chm
plotSegmentedGenome text html latex example chm
plotSummaryProfile text html latex chm
processCGH text html latex chm
read.clonesinfo text html latex chm
removeByWeights text html latex chm
runDNAcopy text html latex chm
runGLAD text html latex chm
sim.structure text html latex example chm
subsetting text html latex example chm
summarize.clones text html latex chm
threshold.func text html latex example chm
zero.length.distr.non.tiled text html latex chm
zero.length.distr.tiled text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\1.8d\Rpacks\snapCGH.Rcheck\00_pkg_src\snapCGH\chm\snapCGH.chm
Compile time: 0 minutes, 0 seconds
53 Topics
200 Local links
0 Internet links
1 Graphic
Created d:\biocbld\1.8d\Rpacks\snapCGH.Rcheck\00_pkg_src\snapCGH\chm\snapCGH.chm, 78,507 bytes
Compression decreased file by 110,292 bytes.
preparing package snapCGH for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
adding MD5 sums
* DONE (snapCGH)