Package: altcdfenvs

Version: 1.6.0

Command: D:\biocbld\1.8d\R\bin\R.exe CMD check altcdfenvs_1.6.0.tar.gz

RetCode: 0

Time: 464.4 seconds

Status: OK

CheckDir: altcdfenvs.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.8d/Rpacks/altcdfenvs.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'altcdfenvs/DESCRIPTION' ... OK
* this is package 'altcdfenvs' version '1.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'altcdfenvs' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating altcdfenvs-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating altcdfenvs-manual.tex ... OK
* checking altcdfenvs-manual.tex ... OK

installing R.css in D:/biocbld/1.8d/Rpacks/altcdfenvs.Rcheck


---------- Making package altcdfenvs ------------
  adding build stamp to DESCRIPTION
  installing R files
  save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy
Loading required package: affyio
Loading required package: matchprobes
Loading required package: makecdfenv
[1] "CdfEnvAffy"
[1] "geneNames"
[1] "["
[1] "indexProbes"
[1] "index2xy"
[1] "index2xy"
[1] "xy2index"
[1] "xy2index"
Creating a new generic function for 'plot' in 'altcdfenvs'
[1] "plot"
[1] "show"
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'altcdfenvs'
     Formats: text html latex example chm 
  CdfEnvAffy-class                  text    html    latex   example chm
  appendCdfEnvAffy                  text    html    latex   example chm
  cdfenv                            text    html    latex   example chm
  cdfenvEx                          text    html    latex   example chm
  copyCdfEnvAffy                    text    html    latex           chm
  countduplicated                   text    html    latex   example chm
  geneNames                         text    html    latex           chm
  getxy.probeseq                    text    html    latex   example chm
  index2xy                          text    html    latex   example chm
  indexProbes.CdfEnvAffy            text    html    latex   example chm
  plot.CdfEnvAffy                   text    html    latex   example chm
  removeIndex                       text    html    latex   example chm
  unique.CdfEnvAffy                 text    html    latex   example chm
  utils.FASTA                       text    html    latex   example chm
  validAffyBatch                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.8d\Rpacks\altcdfenvs.Rcheck\00_pkg_src\altcdfenvs\chm\altcdfenvs.chm


Compile time: 0 minutes, 0 seconds
16	Topics
66	Local links
0	Internet links
1	Graphic


Created d:\biocbld\1.8d\Rpacks\altcdfenvs.Rcheck\00_pkg_src\altcdfenvs\chm\altcdfenvs.chm, 31,749 bytes
Compression decreased file by 24,170 bytes.
  adding MD5 sums

* DONE (altcdfenvs)