Package: SAGElyzer

Version: 1.10.0

Command: D:\biocbld\1.8d\R\bin\R.exe CMD check SAGElyzer_1.10.0.tar.gz

RetCode: 1

Time: 79.5 seconds

Status: ERROR

CheckDir: SAGElyzer.Rcheck

Warnings: NA

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.8d/Rpacks/SAGElyzer.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'SAGElyzer/DESCRIPTION' ... OK
* this is package 'SAGElyzer' version '1.10.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SAGElyzer' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... WARNING
Error: package/namespace load failed for 'SAGElyzer'
Call sequence:
2: stop(gettextf("package/namespace load failed for '%s'", libraryPkgName(package)), 
       call. = FALSE, domain = NA)
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
See section 'Generic functions and methods' of the 'Writing R Extensions'
manual.
* checking replacement functions ... WARNING
Error: package/namespace load failed for 'SAGElyzer'
Call sequence:
2: stop(gettextf("package/namespace load failed for '%s'", libraryPkgName(package)), 
       call. = FALSE, domain = NA)
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
In R, the argument of a replacement function which corresponds to the right
hand side must be named 'value'.
* checking foreign function calls ... WARNING
Error: package/namespace load failed for 'SAGElyzer'
Call sequence:
2: stop(gettextf("package/namespace load failed for '%s'", libraryPkgName(package)), 
       call. = FALSE, domain = NA)
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
See section 'System and foreign language interfaces' of the 'Writing R
Extensions' manual.
* checking Rd files ... OK
* checking for missing documentation entries ... ERROR
Error: package/namespace load failed for 'SAGElyzer'

installing R.css in D:/biocbld/1.8d/Rpacks/SAGElyzer.Rcheck


---------- Making package SAGElyzer ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing exec files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'SAGElyzer'
     Formats: text html latex example chm 
  SAGELyzer                         text    html    latex   example chm
  SAGEMapper                        text    html    latex   example chm
  SAGEToolTips                      text    html    latex   example chm
  SAGEWidget                        text    html    latex   example chm
  con4Win                           text    html    latex   example chm
  getGEOSAGE                        text    html    latex   example chm
  getNormFactor                     text    html    latex   example chm
  getTargetRow                      text    html    latex   example chm
  mergeSAGE                         text    html    latex   example chm
  mergeSAGEWidget                   text    html    latex   example chm
  querySAGE                         text    html    latex   example chm
  selectLibs                        text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.8d\Rpacks\SAGElyzer.Rcheck\00_pkg_src\SAGElyzer\chm\SAGElyzer.chm


Compile time: 0 minutes, 0 seconds
13	Topics
153	Local links
5	Internet links
1	Graphic


Created d:\biocbld\1.8d\Rpacks\SAGElyzer.Rcheck\00_pkg_src\SAGElyzer\chm\SAGElyzer.chm, 41,971 bytes
Compression decreased file by 40,808 bytes.
  preparing package SAGElyzer for lazy loading

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

  adding MD5 sums

* DONE (SAGElyzer)