Provides tools specifically designed for analyzing longitudinal microbiome data. This tool integrates seven functional modules, providing a systematic framework for microbiome time-series analysis. For more details on inferences involving interspecies interactions see Fisher (2014) <doi:10.1371/journal.pone.0102451>. Details on this package are also described in an unpublished manuscript.
| Version: |
0.1.0 |
| Depends: |
R (≥ 3.5) |
| Imports: |
caret, cluster, dplyr, ggdendro, ggplot2, ggraph, MASS, mgcv, plyr, pracma, randomForest, reshape2, scales, splines, stats, tibble, tidygraph, tidyr, vegan, visNetwork |
| Suggests: |
knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: |
2025-09-22 |
| DOI: |
10.32614/CRAN.package.MicrobTiSDA |
| Author: |
Shijia Li  [aut,
cre] |
| Maintainer: |
Shijia Li <s.li2 at uva.nl> |
| BugReports: |
https://github.com/Lishijiagg/MicrobTiSDA/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/Lishijiagg/MicrobTiSDA |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
MicrobTiSDA results |