Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:26:32 -0400 (Thu, 12 Apr 2018).
Package 1194/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
rnaseqcomp 1.8.0 Mingxiang Teng
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: rnaseqcomp |
Version: 1.8.0 |
Command: rm -rf rnaseqcomp.buildbin-libdir rnaseqcomp.Rcheck && mkdir rnaseqcomp.buildbin-libdir rnaseqcomp.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=rnaseqcomp.buildbin-libdir rnaseqcomp_1.8.0.tar.gz >rnaseqcomp.Rcheck\00install.out 2>&1 && cp rnaseqcomp.Rcheck\00install.out rnaseqcomp-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=rnaseqcomp.buildbin-libdir --install="check:rnaseqcomp-install.out" --force-multiarch --no-vignettes --timings rnaseqcomp_1.8.0.tar.gz |
StartedAt: 2018-04-12 02:46:10 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 02:47:39 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 88.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: rnaseqcomp.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf rnaseqcomp.buildbin-libdir rnaseqcomp.Rcheck && mkdir rnaseqcomp.buildbin-libdir rnaseqcomp.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=rnaseqcomp.buildbin-libdir rnaseqcomp_1.8.0.tar.gz >rnaseqcomp.Rcheck\00install.out 2>&1 && cp rnaseqcomp.Rcheck\00install.out rnaseqcomp-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=rnaseqcomp.buildbin-libdir --install="check:rnaseqcomp-install.out" --force-multiarch --no-vignettes --timings rnaseqcomp_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/rnaseqcomp.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'rnaseqcomp/DESCRIPTION' ... OK * this is package 'rnaseqcomp' version '1.8.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'rnaseqcomp' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE plot2TX: no visible global function definition for 'plot' plot2TX: no visible global function definition for 'lines' plot2TX: no visible global function definition for 'box' plot2TX: no visible global function definition for 'legend' plot2TX : <anonymous>: no visible binding for global variable 'sd' plot2TX : <anonymous>: no visible global function definition for 'sd' plotFC: no visible global function definition for 'loess.smooth' plotFC: no visible global function definition for 'plot' plotFC: no visible global function definition for 'lines' plotFC: no visible global function definition for 'legend' plotFC : <anonymous>: no visible global function definition for 'median' plotFC : <anonymous>: no visible global function definition for 'sd' plotNE: no visible global function definition for 'plot' plotNE: no visible global function definition for 'lines' plotNE: no visible global function definition for 'points' plotNE: no visible global function definition for 'box' plotNE: no visible global function definition for 'legend' plotROC: no visible global function definition for 'median' plotROC: no visible global function definition for 'sd' plotROC: no visible global function definition for 'plot' plotROC: no visible global function definition for 'lines' plotROC: no visible global function definition for 'arrows' plotROC: no visible global function definition for 'abline' plotROC: no visible global function definition for 'legend' plotSD : <anonymous>: no visible binding for global variable 'sd' plotSD: no visible global function definition for 'loess.smooth' plotSD: no visible global function definition for 'plot' plotSD: no visible global function definition for 'lines' plotSD: no visible global function definition for 'box' plotSD: no visible global function definition for 'legend' plotSD : <anonymous> : <anonymous>: no visible global function definition for 'median' plotSD : <anonymous> : <anonymous>: no visible global function definition for 'mad' signalCalibrate : <anonymous>: no visible binding for global variable 'median' signalCalibrate: no visible global function definition for 'median' Undefined global functions or variables: abline arrows box legend lines loess.smooth mad median plot points sd Consider adding importFrom("graphics", "abline", "arrows", "box", "legend", "lines", "plot", "points") importFrom("stats", "loess.smooth", "mad", "median", "sd") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed plotROC 17.78 0.26 18.05 plotNE 5.90 0.10 6.00 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed plotROC 17.28 0.12 17.41 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/rnaseqcomp.Rcheck/00check.log' for details.
rnaseqcomp.Rcheck/00install.out
install for i386 * installing *source* package 'rnaseqcomp' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'rnaseqcomp' finding HTML links ... done check_rnaseqcomp html plot2TX html plotFC html plotNE html plotROC html plotSD html rnaseqcomp-class html signalCalibrate html simdata html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'rnaseqcomp' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'rnaseqcomp' as rnaseqcomp_1.8.0.zip * DONE (rnaseqcomp) In R CMD INSTALL In R CMD INSTALL
rnaseqcomp.Rcheck/examples_i386/rnaseqcomp-Ex.timings
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rnaseqcomp.Rcheck/examples_x64/rnaseqcomp-Ex.timings
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