Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:45:50 -0400 (Thu, 12 Apr 2018).
Package 966/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
omicRexposome 1.0.1 Carles Hernandez-Ferrer
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | [ OK ] | OK | ![]() |
Package: omicRexposome |
Version: 1.0.1 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings omicRexposome_1.0.1.tar.gz |
StartedAt: 2018-04-12 07:13:16 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 07:17:06 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 230.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: omicRexposome.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings omicRexposome_1.0.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/omicRexposome.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘omicRexposome/DESCRIPTION’ ... OK * this is package ‘omicRexposome’ version ‘1.0.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘omicRexposome’ can be installed ... OK * checking installed package size ... NOTE installed size is 5.1Mb sub-directories of 1Mb or more: doc 2.2Mb extdata 2.2Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed association-methods 5.881 0.038 6.046 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.6-bioc/meat/omicRexposome.Rcheck/00check.log’ for details.
omicRexposome.Rcheck/00install.out
* installing *source* package ‘omicRexposome’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (omicRexposome)
omicRexposome.Rcheck/omicRexposome-Ex.timings
name | user | system | elapsed | |
add_cls-methods | 0.725 | 0.008 | 0.747 | |
add_exp-methods | 0.073 | 0.006 | 0.078 | |
asr | 0.023 | 0.004 | 0.026 | |
association-methods | 5.881 | 0.038 | 6.046 | |
crossomics-methods | 1.338 | 0.052 | 1.412 | |
crs | 0.002 | 0.000 | 0.003 | |
getIntegration-methods | 0.003 | 0.001 | 0.004 | |
mds | 0.010 | 0.001 | 0.011 | |
plotAssociation-methods | 2.065 | 0.008 | 2.114 | |
plotHits-methods | 0.384 | 0.002 | 0.399 | |
plotIntegration-methods | 1.040 | 0.004 | 1.055 | |
plotLambda-methods | 0.261 | 0.002 | 0.268 | |
tableHits-methods | 0.061 | 0.001 | 0.062 | |
tableLambda-methods | 0.105 | 0.004 | 0.111 | |