Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:40:43 -0400 (Thu, 12 Apr 2018).
Package 882/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
mogsa 1.12.2 Chen Meng
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | [ OK ] | OK | ![]() |
Package: mogsa |
Version: 1.12.2 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings mogsa_1.12.2.tar.gz |
StartedAt: 2018-04-12 06:37:35 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 06:40:01 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 145.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: mogsa.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings mogsa_1.12.2.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/mogsa.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘mogsa/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘mogsa’ version ‘1.12.2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mogsa’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
mogsa.Rcheck/00install.out
* installing *source* package ‘mogsa’ ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (mogsa)
mogsa.Rcheck/mogsa-Ex.timings
name | user | system | elapsed | |
GIS | 0.848 | 0.025 | 0.890 | |
annotate.gs | 0.600 | 0.023 | 0.637 | |
bootMbpca | 0.000 | 0.000 | 0.002 | |
box.gs.feature | 0.251 | 0.014 | 0.273 | |
combine-methods | 0.416 | 0.016 | 0.439 | |
decompose.gs.group | 0.643 | 0.022 | 0.672 | |
decompose.gs.ind | 0.123 | 0.016 | 0.143 | |
distMoa | 0.542 | 0.023 | 0.577 | |
getmgsa | 0.107 | 0.012 | 0.121 | |
matpower | 0.009 | 0.000 | 0.009 | |
mbpca | 3.124 | 0.136 | 3.318 | |
mgsa-class | 0.477 | 0.014 | 0.499 | |
moGap | 1.249 | 0.024 | 1.289 | |
moa-class | 0.120 | 0.005 | 0.128 | |
moa | 0.405 | 0.009 | 0.421 | |
moa.sup-class | 0.115 | 0.010 | 0.129 | |
moaCoef | 0.352 | 0.021 | 0.385 | |
moaScore | 0.337 | 0.021 | 0.360 | |
mogsa-package | 0.217 | 0.024 | 0.244 | |
mogsa | 0.467 | 0.024 | 0.495 | |
pairwise.rv | 0.008 | 0.001 | 0.009 | |
plotGS | 0.142 | 0.010 | 0.155 | |
prepGraphite | 0.355 | 0.016 | 0.373 | |
prepMsigDB | 0.005 | 0.000 | 0.005 | |
prepSupMoa | 4.241 | 0.070 | 4.357 | |
softK | 0.001 | 0.000 | 0.001 | |
sup.moa | 0.651 | 0.016 | 0.679 | |
wsvd | 0.002 | 0.000 | 0.002 | |