Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:11:20 -0400 (Thu, 12 Apr 2018).
Package 1383/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
TargetScore 1.16.0 Yue Li
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: TargetScore |
Version: 1.16.0 |
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings TargetScore_1.16.0.tar.gz |
StartedAt: 2018-04-12 03:16:07 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 03:16:43 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 36.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: TargetScore.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings TargetScore_1.16.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/TargetScore.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘TargetScore/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘TargetScore’ version ‘1.16.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘TargetScore’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE dot.ext: no visible global function definition for ‘size’ getTargetScores: no visible global function definition for ‘get_TargetScanHuman_contextScore’ getTargetScores: no visible global function definition for ‘get_TargetScanHuman_PCT’ getTargetScores: no visible global function definition for ‘get_validated_targets’ getTargetScores: no visible global function definition for ‘get_miRNA_family_info’ getTargetScores: no visible binding for global variable ‘logFC.imputed’ getTargetScores : <anonymous>: no visible global function definition for ‘cor’ getTargetScores: no visible global function definition for ‘aggregate’ logmvgamma: no visible global function definition for ‘size’ targetScore: no visible global function definition for ‘as.roman’ targetScore : <anonymous>: no visible global function definition for ‘as.roman’ targetScore: no visible global function definition for ‘sigmoid’ Undefined global functions or variables: aggregate as.roman cor get_TargetScanHuman_PCT get_TargetScanHuman_contextScore get_miRNA_family_info get_validated_targets logFC.imputed sigmoid size Consider adding importFrom("stats", "aggregate", "cor") importFrom("utils", "as.roman") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.6-bioc/meat/TargetScore.Rcheck/00check.log’ for details.
TargetScore.Rcheck/00install.out
* installing *source* package ‘TargetScore’ ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (TargetScore)
TargetScore.Rcheck/TargetScore-Ex.timings
name | user | system | elapsed | |
TargetScore-package | 0.000 | 0.000 | 0.001 | |
bsxfun.se | 0.000 | 0.000 | 0.001 | |
dot.ext | 0.004 | 0.000 | 0.001 | |
getTargetScores | 0.000 | 0.000 | 0.002 | |
initialization | 0.020 | 0.004 | 0.024 | |
logmvgamma | 0.000 | 0.000 | 0.001 | |
logsumexp | 0.004 | 0.000 | 0.001 | |
sort_components | 0.324 | 0.000 | 0.324 | |
targetScore | 0.504 | 0.000 | 0.506 | |
vbgmm | 0.072 | 0.000 | 0.071 | |
vbound | 0.076 | 0.000 | 0.073 | |
vexp | 0.072 | 0.000 | 0.073 | |
vmax | 0.076 | 0.000 | 0.074 | |