Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:27:31 -0400 (Thu, 12 Apr 2018).
Package 1179/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
RImmPort 1.7.2 Zicheng Hu
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: RImmPort |
Version: 1.7.2 |
Command: rm -rf RImmPort.buildbin-libdir RImmPort.Rcheck && mkdir RImmPort.buildbin-libdir RImmPort.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RImmPort.buildbin-libdir RImmPort_1.7.2.tar.gz >RImmPort.Rcheck\00install.out 2>&1 && cp RImmPort.Rcheck\00install.out RImmPort-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=RImmPort.buildbin-libdir --install="check:RImmPort-install.out" --force-multiarch --no-vignettes --timings RImmPort_1.7.2.tar.gz |
StartedAt: 2018-04-12 02:41:49 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 02:42:55 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 66.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RImmPort.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf RImmPort.buildbin-libdir RImmPort.Rcheck && mkdir RImmPort.buildbin-libdir RImmPort.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RImmPort.buildbin-libdir RImmPort_1.7.2.tar.gz >RImmPort.Rcheck\00install.out 2>&1 && cp RImmPort.Rcheck\00install.out RImmPort-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=RImmPort.buildbin-libdir --install="check:RImmPort-install.out" --force-multiarch --no-vignettes --timings RImmPort_1.7.2.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/RImmPort.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'RImmPort/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'RImmPort' version '1.7.2' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'RImmPort' can be installed ... OK * checking installed package size ... NOTE installed size is 5.6Mb sub-directories of 1Mb or more: doc 1.1Mb extdata 3.8Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE buildNewSqliteDb: no visible global function definition for 'dbListTables' Undefined global functions or variables: dbListTables * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/RImmPort.Rcheck/00check.log' for details.
RImmPort.Rcheck/00install.out
install for i386 * installing *source* package 'RImmPort' ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'RImmPort' finding HTML links ... done AE html APMH html Adverse-Events-Domain html Associated-Persons-Medical-History-Domain html CM html Cellular-Quantification-Domain html Concomitant-Medications-Domain html DM html DV html Demographics-Domain html EX html Events-class html Exposure-Domain html FA html Findings-About-Domain html Findings-class html Genetics-Findings-Domain html Interventions-class html LB html Laboratory-Test-Results-Domain html MH html Medical-History-Domain html Nucleic-Acid-Quantification-Domain html PE html PF html Physical-Examination-Domain html Protein-Quantification-Domain html Protocol-Deviations-Domain html QS html Questionnaires-Domain html RImmPort html SR html SU html SUPP html SUPPDV html SUPPFA html SUPPLB html SUPPMH html SUPPPE html SUPPPF html SUPPVS html SUPPZA html SUPPZB html SUPPZC html SUPPZD html SV html Skin-Response-Domain html SpecialPurpose-class html Study-class html Subject-Visits-Domain html Substance-Use-Domain html TA html TI html TS html TV html Titer-Assay-Results-Domain html Trial-Arms-Domain html Trial-Inclusion-Exclusion-Criteria-Domain html Trial-Summary-Domain html Trial-Visits-Domain html TrialDesign-class html VS html Vital-Signs-Domain html ZA html ZB html ZC html ZD html buildNewSqliteDb html getAssayDataOfStudies html getDomainCode html getDomainDataOfStudies html getListOfAssayTypes html getListOfDomains html getListOfStudies html getStudiesWithSpecificAssayData html getStudiesWithSpecificDomainData html getStudy html loadSerializedStudyData html mergeDomainAndSupplemental html serialzeStudyData html setImmPortDataSource html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'RImmPort' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'RImmPort' as RImmPort_1.7.2.zip * DONE (RImmPort) In R CMD INSTALL In R CMD INSTALL
RImmPort.Rcheck/examples_i386/RImmPort-Ex.timings
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RImmPort.Rcheck/examples_x64/RImmPort-Ex.timings
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