Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:12:45 -0400 (Thu, 12 Apr 2018).
Package 1083/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
PSEA 1.12.0 Alexandre Kuhn
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: PSEA |
Version: 1.12.0 |
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings PSEA_1.12.0.tar.gz |
StartedAt: 2018-04-12 01:58:32 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 01:59:00 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 28.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: PSEA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings PSEA_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/PSEA.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘PSEA/DESCRIPTION’ ... OK * this is package ‘PSEA’ version ‘1.12.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PSEA’ can be installed ... OK * checking installed package size ... NOTE installed size is 6.3Mb sub-directories of 1Mb or more: data 5.7Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Title field: should not end in a period. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE crplot: no visible global function definition for ‘residuals’ crplot: no visible global function definition for ‘dev.new’ crplot: no visible global function definition for ‘plot’ crplot: no visible global function definition for ‘abline’ crplot: no visible global function definition for ‘points’ lmfitst : <anonymous>: no visible global function definition for ‘lm.fit’ swlm: no visible global function definition for ‘formula’ swlm: no visible global function definition for ‘lm’ Undefined global functions or variables: abline dev.new formula lm lm.fit plot points residuals Consider adding importFrom("grDevices", "dev.new") importFrom("graphics", "abline", "plot", "points") importFrom("stats", "formula", "lm", "lm.fit", "residuals") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... NOTE 'library' or 'require' calls not declared from: ‘GEOquery’ ‘affy’ * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 4 NOTEs See ‘/home/biocbuild/bbs-3.6-bioc/meat/PSEA.Rcheck/00check.log’ for details.
PSEA.Rcheck/00install.out
* installing *source* package ‘PSEA’ ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (PSEA)
PSEA.Rcheck/PSEA-Ex.timings
name | user | system | elapsed | |
coefmat | 0.120 | 0.008 | 0.129 | |
crplot | 0.012 | 0.000 | 0.010 | |
em_quantvg | 0.044 | 0.000 | 0.047 | |
fmm | 0.028 | 0.000 | 0.030 | |
lmfitst | 0.072 | 0.000 | 0.069 | |
marker | 0.004 | 0.000 | 0.004 | |
pvalmat | 0.048 | 0.000 | 0.049 | |
slt | 0.000 | 0.000 | 0.003 | |
swlm | 0.088 | 0.000 | 0.088 | |