This page was generated on 2018-04-12 13:10:32 -0400 (Thu, 12 Apr 2018).
ChIPXpress 1.22.0 George Wu
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
URL: https://git.bioconductor.org/packages/ChIPXpress |
Branch: RELEASE_3_6 |
Last Commit: aa3ae8c |
Last Changed Date: 2018-01-05 21:52:55 -0400 (Fri, 05 Jan 2018) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
tokay1 | Windows Server 2012 R2 Standard / x64 | ...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED... |
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> require("ChIPXpress") || stop("unable to load ChIPXpress")
Loading required package: ChIPXpress
Loading required package: ChIPXpressData
Loading required package: bigmemory
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
[1] TRUE
> BiocGenerics:::testPackage("ChIPXpress")
Downloading File 1: GSM24056...
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM24nnn/GSM24056/suppl//GSM24056.CEL.gz?tool=geoquery'
Content type 'application/x-gzip' length 6554536 bytes (6.3 MB)
==================================================
downloaded 6.3 MB
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM24nnn/GSM24056/suppl//GSM24056.RPT.gz?tool=geoquery'
Content type 'application/x-gzip' length 552 bytes
==================================================
downloaded 552 bytes
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM24nnn/GSM24056/suppl//GSM24056.TXT.gz?tool=geoquery'
Content type 'application/x-gzip' length 2670956 bytes (2.5 MB)
==================================================
downloaded 2.5 MB
Processing File 1: GSM24056...
Downloading File 2: GSM24058...
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM24nnn/GSM24058/suppl//GSM24058.CEL.gz?tool=geoquery'
Content type 'application/x-gzip' length 6590195 bytes (6.3 MB)
==================================================
downloaded 6.3 MB
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM24nnn/GSM24058/suppl//GSM24058.RPT.gz?tool=geoquery'
Content type 'application/x-gzip' length 554 bytes
==================================================
downloaded 554 bytes
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM24nnn/GSM24058/suppl//GSM24058.TXT.gz?tool=geoquery'
Content type 'application/x-gzip' length 2670894 bytes (2.5 MB)
==================================================
downloaded 2.5 MB
Processing File 2: GSM24058...
Downloading File 3: GSM24060...
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM24nnn/GSM24060/suppl//GSM24060.CEL.gz?tool=geoquery'
Content type 'application/x-gzip' length 6664765 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM24nnn/GSM24060/suppl//GSM24060.RPT.gz?tool=geoquery'
Content type 'application/x-gzip' length 549 bytes
==================================================
downloaded 549 bytes
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM24nnn/GSM24060/suppl//GSM24060.TXT.gz?tool=geoquery'
Content type 'application/x-gzip' length 2669000 bytes (2.5 MB)
==================================================
downloaded 2.5 MB
Processing File 3: GSM24060...
Downloading File 4: GSM94856...
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM94nnn/GSM94856/suppl//GSM94856.CEL.gz?tool=geoquery'
Content type 'application/x-gzip' length 6247826 bytes (6.0 MB)
==================================================
downloaded 6.0 MB
Processing File 4: GSM94856...
Downloading File 5: GSM94857...
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM94nnn/GSM94857/suppl//GSM94857.CEL.gz?tool=geoquery'
Content type 'application/x-gzip' length 6014425 bytes (5.7 MB)
==================================================
downloaded 5.7 MB
Processing File 5: GSM94857...
Downloading File 6: GSM94858...
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM94nnn/GSM94858/suppl//GSM94858.CEL.gz?tool=geoquery'
Content type 'application/x-gzip' length 6029560 bytes (5.8 MB)
==================================================
downloaded 5.8 MB
Processing File 6: GSM94858...
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Loading required package: org.Mm.eg.db
Success!
4773 out of 5158 (92.5%) genes processed
RUNIT TEST PROTOCOL -- Wed Apr 11 22:19:58 2018
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
ChIPXpress RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
Warning messages:
1: replacing previous import 'AnnotationDbi::tail' by 'utils::tail' when loading 'mouse4302cdf'
2: replacing previous import 'AnnotationDbi::head' by 'utils::head' when loading 'mouse4302cdf'
>
> proc.time()
user system elapsed
195.220 6.444 208.973