Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:19:14 -0400 (Thu, 12 Apr 2018).
Package 203/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
CGHbase 1.38.0 Mark van de Wiel
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() |
Package: CGHbase |
Version: 1.38.0 |
Command: rm -rf CGHbase.buildbin-libdir && mkdir CGHbase.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/CGHbase_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=CGHbase.buildbin-libdir --merge-multiarch CGHbase_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL CGHbase_1.38.0.zip && rm CGHbase_1.38.0.tar.gz CGHbase_1.38.0.zip |
StartedAt: 2018-04-11 18:24:10 -0400 (Wed, 11 Apr 2018) |
EndedAt: 2018-04-11 18:24:50 -0400 (Wed, 11 Apr 2018) |
EllapsedTime: 39.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf CGHbase.buildbin-libdir && mkdir CGHbase.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/CGHbase_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=CGHbase.buildbin-libdir --merge-multiarch CGHbase_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL CGHbase_1.38.0.zip && rm CGHbase_1.38.0.tar.gz CGHbase_1.38.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 850k 100 850k 0 0 26.5M 0 --:--:-- --:--:-- --:--:-- 29.6M install for i386 * installing *source* package 'CGHbase' ... ** R ** data ** preparing package for lazy loading ** help *** installing help indices converting help for package 'CGHbase' finding HTML links ... done CGHbase-package html Wilting html WiltingCalled html WiltingNorm html WiltingRaw html WiltingRegions html WiltingSeg html avedist html chromosomes html class.cghCall html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghCall.Rd:42: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghCall.Rd:56: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghCall.Rd:95: missing file link 'AssayData-class' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghCall.Rd:96: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghCall.Rd:97: missing file link 'AnnotatedDataFrame' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghCall.Rd:100: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghCall.Rd:101: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghCall.Rd:137: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghCall.Rd:143: missing file link 'eSet-class' class.cghRaw html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghRaw.Rd:25: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghRaw.Rd:30: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghRaw.Rd:62: missing file link 'AssayData-class' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghRaw.Rd:63: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghRaw.Rd:64: missing file link 'AnnotatedDataFrame' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghRaw.Rd:67: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghRaw.Rd:68: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghRaw.Rd:82: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghRaw.Rd:88: missing file link 'eSet-class' class.cghRegions html class.cghSeg html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghSeg.Rd:27: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghSeg.Rd:33: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghSeg.Rd:60: missing file link 'AssayData-class' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghSeg.Rd:61: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghSeg.Rd:62: missing file link 'AnnotatedDataFrame' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghSeg.Rd:65: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghSeg.Rd:66: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghSeg.Rd:85: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghSeg.Rd:91: missing file link 'eSet-class' copynumber html frequencyPlot html frequencyPlotCalls html make_cghRaw html plot html probloss html regions html summaryPlot html ** building package indices ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'CGHbase' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'CGHbase' as CGHbase_1.38.0.zip * DONE (CGHbase) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library' package 'CGHbase' successfully unpacked and MD5 sums checked In R CMD INSTALL