Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:08:52 -0400 (Thu, 12 Apr 2018).
Package 140/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
BioSeqClass 1.36.0 Li Hong
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: BioSeqClass |
Version: 1.36.0 |
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings BioSeqClass_1.36.0.tar.gz |
StartedAt: 2018-04-11 21:50:24 -0400 (Wed, 11 Apr 2018) |
EndedAt: 2018-04-11 21:52:50 -0400 (Wed, 11 Apr 2018) |
EllapsedTime: 146.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: BioSeqClass.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings BioSeqClass_1.36.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/BioSeqClass.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘BioSeqClass/DESCRIPTION’ ... OK * this is package ‘BioSeqClass’ version ‘1.36.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘BioSeqClass’ can be installed ... OK * checking installed package size ... NOTE installed size is 6.7Mb sub-directories of 1Mb or more: data 2.9Mb scripts 3.0Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. Package listed in more than one of Depends, Imports, Suggests, Enhances: ‘scatterplot3d’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: ‘scatterplot3d’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE classifyModelCTREELIBSVM: no visible global function definition for ‘plot’ Undefined global functions or variables: plot Consider adding importFrom("graphics", "plot") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed classify 6.932 0.18 5.669 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 4 NOTEs See ‘/home/biocbuild/bbs-3.6-bioc/meat/BioSeqClass.Rcheck/00check.log’ for details.
BioSeqClass.Rcheck/00install.out
* installing *source* package ‘BioSeqClass’ ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (BioSeqClass)
BioSeqClass.Rcheck/BioSeqClass-Ex.timings
name | user | system | elapsed | |
basic | 0.640 | 0.032 | 0.673 | |
classify | 6.932 | 0.180 | 5.669 | |
featureAAindex | 0.000 | 0.000 | 0.002 | |
featureBDNAVIDEO | 0.004 | 0.000 | 0.001 | |
featureBinary | 0 | 0 | 0 | |
featureCKSAAP | 0.000 | 0.000 | 0.001 | |
featureCTD | 0.000 | 0.000 | 0.001 | |
featureDIPRODB | 0.000 | 0.000 | 0.002 | |
featureDOMAIN | 0 | 0 | 0 | |
featureEvaluate | 0.016 | 0.000 | 0.016 | |
featureFragmentComposition | 0.000 | 0.000 | 0.001 | |
featureGapPairComposition | 0.000 | 0.000 | 0.001 | |
featureHydro | 0.000 | 0.000 | 0.002 | |
featurePSSM | 0.000 | 0.000 | 0.001 | |
featurePseudoAAComp | 0.000 | 0.000 | 0.001 | |
featureSSC | 0.004 | 0.000 | 0.002 | |
hr | 0.004 | 0.000 | 0.003 | |
model | 0.872 | 0.012 | 0.885 | |
performance | 1.140 | 0.012 | 1.154 | |
selectFFS | 0.300 | 0.008 | 0.311 | |