Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:09:00 -0400 (Thu, 12 Apr 2018).
Package 104/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
BeadDataPackR 1.30.0 Mike Smith
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() |
Package: BeadDataPackR |
Version: 1.30.0 |
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings BeadDataPackR_1.30.0.tar.gz |
StartedAt: 2018-04-11 21:42:44 -0400 (Wed, 11 Apr 2018) |
EndedAt: 2018-04-11 21:43:01 -0400 (Wed, 11 Apr 2018) |
EllapsedTime: 17.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: BeadDataPackR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings BeadDataPackR_1.30.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/BeadDataPackR.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘BeadDataPackR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘BeadDataPackR’ version ‘1.30.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘BeadDataPackR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE combineFiles: no visible global function definition for ‘setTxtProgressBar’ compressBeadData: no visible global function definition for ‘txtProgressBar’ compressBeadData: no visible global function definition for ‘setTxtProgressBar’ createIndices: no visible global function definition for ‘setTxtProgressBar’ createIndices: no visible global function definition for ‘lm’ decodeIndices: no visible global function definition for ‘setTxtProgressBar’ decompressBeadData: no visible global function definition for ‘txtProgressBar’ decompressBeadData: no visible global function definition for ‘setTxtProgressBar’ decompressBeadData: no visible global function definition for ‘write.table’ numberOfChannels: no visible global function definition for ‘read.table’ writeBabBody: no visible global function definition for ‘setTxtProgressBar’ Undefined global functions or variables: lm read.table setTxtProgressBar txtProgressBar write.table Consider adding importFrom("stats", "lm") importFrom("utils", "read.table", "setTxtProgressBar", "txtProgressBar", "write.table") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.6-bioc/meat/BeadDataPackR.Rcheck/00check.log’ for details.
BeadDataPackR.Rcheck/00install.out
* installing *source* package ‘BeadDataPackR’ ... ** libs gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c BeadDataPackR.c -o BeadDataPackR.o gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c R_init_BeadDataPackR.c -o R_init_BeadDataPackR.o g++ -shared -L/home/biocbuild/bbs-3.6-bioc/R/lib -L/usr/local/lib -o BeadDataPackR.so BeadDataPackR.o R_init_BeadDataPackR.o -L/home/biocbuild/bbs-3.6-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.6-bioc/meat/BeadDataPackR.Rcheck/BeadDataPackR/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (BeadDataPackR)
BeadDataPackR.Rcheck/BeadDataPackR-Ex.timings
name | user | system | elapsed | |
compressBeadData | 0.04 | 0.00 | 0.04 | |
decompressBeadData | 0.04 | 0.00 | 0.04 | |
extractLocsFile | 0.028 | 0.000 | 0.029 | |
readCompressedData | 0.008 | 0.000 | 0.006 | |