Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:43:21 -0400 (Thu, 12 Apr 2018).
Package 538/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
GeneGeneInteR 1.4.0 Mathieu Emily
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | [ OK ] | OK | ![]() |
Package: GeneGeneInteR |
Version: 1.4.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings GeneGeneInteR_1.4.0.tar.gz |
StartedAt: 2018-04-12 04:10:01 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 04:15:51 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 350.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GeneGeneInteR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings GeneGeneInteR_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/GeneGeneInteR.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘GeneGeneInteR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘GeneGeneInteR’ version ‘1.4.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GeneGeneInteR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CCA.test: no visible global function definition for 'as' CLD.test: no visible global function definition for 'as' GBIGM.test: no visible global function definition for 'as' KCCA.test: no visible global function definition for 'as' PCA.Std: no visible global function definition for 'as' PLSPM.test: no visible global function definition for 'as' imputeSnpMatrix: no visible global function definition for 'as' snpMatrixScour: no visible global function definition for 'as' Undefined global functions or variables: as Consider adding importFrom("methods", "as") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.6-bioc/meat/GeneGeneInteR.Rcheck/00check.log’ for details.
GeneGeneInteR.Rcheck/00install.out
* installing *source* package ‘GeneGeneInteR’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (GeneGeneInteR)
GeneGeneInteR.Rcheck/GeneGeneInteR-Ex.timings
name | user | system | elapsed | |
CCA.test | 1.281 | 0.044 | 1.352 | |
CLD.test | 1.180 | 0.020 | 1.223 | |
GBIGM.test | 3.431 | 0.010 | 3.523 | |
GGI | 1.492 | 0.018 | 1.546 | |
KCCA.test | 0.002 | 0.001 | 0.002 | |
PCA.test | 0.462 | 0.003 | 0.472 | |
PLSPM.test | 3.545 | 0.047 | 3.671 | |
gates.test | 0.379 | 0.005 | 0.388 | |
importFile | 0.615 | 0.006 | 0.638 | |
imputeSnpMatrix | 0.682 | 0.010 | 0.709 | |
minP.test | 0.627 | 0.004 | 0.643 | |
plot.GGInetwork | 1.402 | 0.008 | 1.431 | |
print.GGItest | 0.081 | 0.001 | 0.083 | |
selectSnps | 0.008 | 0.001 | 0.012 | |
snpMatrixScour | 0.036 | 0.001 | 0.036 | |
summary.GGInetwork | 0.007 | 0.001 | 0.008 | |
summary.GGItest | 0.022 | 0.001 | 0.023 | |
tProd.test | 0.447 | 0.003 | 0.453 | |
tTS.test | 0.526 | 0.005 | 0.539 | |