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BioC 3.4: INSTALL report for metaArray on moscato1

This page was generated on 2016-09-21 03:41:42 -0700 (Wed, 21 Sep 2016).

Package 717/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metaArray 1.51.0
Hyungwon Choi
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/metaArray
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: metaArray
Version: 1.51.0
Command: rm -rf metaArray.buildbin-libdir && mkdir metaArray.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/metaArray_1.51.0.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=metaArray.buildbin-libdir --merge-multiarch metaArray_1.51.0.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL metaArray_1.51.0.zip && rm metaArray_1.51.0.tar.gz metaArray_1.51.0.zip
StartedAt: 2016-09-19 20:36:20 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 20:36:51 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 30.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf metaArray.buildbin-libdir && mkdir metaArray.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/metaArray_1.51.0.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=metaArray.buildbin-libdir --merge-multiarch metaArray_1.51.0.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL metaArray_1.51.0.zip  && rm metaArray_1.51.0.tar.gz metaArray_1.51.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  661k  100  661k    0     0  35.4M      0 --:--:-- --:--:-- --:--:-- 49.7M

install for i386

* installing *source* package 'metaArray' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c contr.c -o contr.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c dproc.c -o dproc.o
dproc.c: In function 'malloc_CH':
dproc.c:111:21: warning: variable 'num' set but not used [-Wunused-but-set-variable]
   int i, j, nr, nc, num;
                     ^
dproc.c: In function 'free_CH':
dproc.c:192:16: warning: unused variable 'nc' [-Wunused-variable]
   int num, nr, nc;
                ^
dproc.c:192:12: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
   int num, nr, nc;
            ^
dproc.c:192:7: warning: variable 'num' set but not used [-Wunused-but-set-variable]
   int num, nr, nc;
       ^
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c dproc2.c -o dproc2.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c intcor.c -o intcor.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c lowess.c -o lowess.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c mmath.c -o mmath.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c perm.c -o perm.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c poe.c -o poe.o
poe.c: In function 'poe_one_iter':
poe.c:131:53: warning: variable 'shift' set but not used [-Wunused-but-set-variable]
   double kappa_b, kappa_a, kappa_new, aaa, res_max, shift;         
                                                     ^
poe.c:120:20: warning: variable 'accept' set but not used [-Wunused-but-set-variable]
   int nr,nc,tt,gg, accept;
                    ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o metaArray.dll tmp.def contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm -Lc:/local323/lib/i386 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/metaArray.buildbin-libdir/metaArray/libs/i386
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'metaArray' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c contr.c -o contr.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c dproc.c -o dproc.o
dproc.c: In function 'malloc_CH':
dproc.c:111:21: warning: variable 'num' set but not used [-Wunused-but-set-variable]
   int i, j, nr, nc, num;
                     ^
dproc.c: In function 'free_CH':
dproc.c:192:16: warning: unused variable 'nc' [-Wunused-variable]
   int num, nr, nc;
                ^
dproc.c:192:12: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
   int num, nr, nc;
            ^
dproc.c:192:7: warning: variable 'num' set but not used [-Wunused-but-set-variable]
   int num, nr, nc;
       ^
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c dproc2.c -o dproc2.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c intcor.c -o intcor.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c lowess.c -o lowess.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c mmath.c -o mmath.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c perm.c -o perm.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c poe.c -o poe.o
poe.c: In function 'poe_one_iter':
poe.c:131:53: warning: variable 'shift' set but not used [-Wunused-but-set-variable]
   double kappa_b, kappa_a, kappa_new, aaa, res_max, shift;         
                                                     ^
poe.c:120:20: warning: variable 'accept' set but not used [-Wunused-but-set-variable]
   int nr,nc,tt,gg, accept;
                    ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o metaArray.dll tmp.def contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm -Lc:/local323/lib/x64 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/metaArray.buildbin-libdir/metaArray/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metaArray' as metaArray_1.51.0.zip
* DONE (metaArray)
* installing to library 'D:/biocbld/bbs-3.4-bioc/R/library'
package 'metaArray' successfully unpacked and MD5 sums checked