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BioC 3.4: BUILD report for mAPKL on moscato1

This page was generated on 2016-09-21 03:46:42 -0700 (Wed, 21 Sep 2016).

Package 687/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mAPKL 1.5.2
Argiris Sakellariou
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/mAPKL
Last Changed Rev: 117512 / Revision: 121152
Last Changed Date: 2016-05-15 13:14:22 -0700 (Sun, 15 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  ERROR  skipped 
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded [ ERROR ] skipped  skipped 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: mAPKL
Version: 1.5.2
Command: chmod a+r mAPKL -R && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data mAPKL
StartedAt: 2016-09-20 01:28:52 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 01:31:58 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 186.2 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r mAPKL -R && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data mAPKL
###
##############################################################################
##############################################################################


* checking for file 'mAPKL/DESCRIPTION' ... OK
* preparing 'mAPKL':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"D:/biocbld/bbs-3.4-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport,
    clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply,
    parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame,
    cbind, colnames, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff,
    sort, table, tapply, union, unique, unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with 'browseVignettes()'. To
    cite Bioconductor, see 'citation("Biobase")', and for packages
    'citation("pkgname")'.


This is package 'modeest' written by P. PONCET.
For a complete list of functions, use 'library(help = "modeest")' or 'help.start()'.

Assign 60% as train data and 40% as test data
Saving density graph for breast$trainData in D:/biocbld/bbs-3.4-bioc/tmpdir/RtmpKiLKgD/Rbuildfc869473390/mAPKL/vignettes
Saving density graph for breast$testData in D:/biocbld/bbs-3.4-bioc/tmpdir/RtmpKiLKgD/Rbuildfc869473390/mAPKL/vignettes
Quitting from lines 139-143 (mAPKL.Rnw) 
Error: processing vignette 'mAPKL.Rnw' failed with diagnostics:
object and replacement value have different dimensions
Execution halted