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BioC 3.4: BUILD report for gprege on moscato1

This page was generated on 2016-09-21 03:44:07 -0700 (Wed, 21 Sep 2016).

Package 536/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gprege 1.17.0
Alfredo Kalaitzis
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gprege
Last Changed Rev: 118174 / Revision: 121152
Last Changed Date: 2016-06-03 17:28:17 -0700 (Fri, 03 Jun 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  ERROR  skipped 
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded [ ERROR ] skipped  skipped 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: gprege
Version: 1.17.0
Command: chmod a+r gprege -R && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data gprege
StartedAt: 2016-09-19 23:24:31 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 23:24:41 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 10.5 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r gprege -R && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data gprege
###
##############################################################################
##############################################################################


* checking for file 'gprege/DESCRIPTION' ... OK
* preparing 'gprege':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"D:/biocbld/bbs-3.4-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: gptk
Loading required package: Matrix
Loading required package: fields
Loading required package: spam
Loading required package: grid
Spam version 1.4-0 (2016-08-29) is loaded.
Type 'help( Spam)' or 'demo( spam)' for a short introduction 
and overview of this package.
Help for individual functions is also obtained by adding the
suffix '.spam' to the function name, e.g. 'help( chol.spam)'.

Attaching package: 'spam'

The following objects are masked from 'package:base':

    backsolve, forwardsolve

Loading required package: maps

Error: processing vignette 'gprege_quick.Rnw' failed with diagnostics:
 chunk 7 
Error in which(DGatta_labels_byTSNItop100) : 
  object 'DGatta_labels_byTSNItop100' not found
Execution halted