Back to the "Multiple platform build/check report" A [B] C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.4: CHECK report for beadarray on zin1

This page was generated on 2016-08-19 02:35:37 -0700 (Fri, 19 Aug 2016).

Package 87/1245HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
beadarray 2.23.2
Mark Dunning
Snapshot Date: 2016-08-17 19:15:45 -0700 (Wed, 17 Aug 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/beadarray
Last Changed Rev: 117512 / Revision: 120233
Last Changed Date: 2016-05-15 13:14:22 -0700 (Sun, 15 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: beadarray
Version: 2.23.2
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings beadarray_2.23.2.tar.gz
StartedAt: 2016-08-18 03:16:00 -0700 (Thu, 18 Aug 2016)
EndedAt: 2016-08-18 03:22:29 -0700 (Thu, 18 Aug 2016)
EllapsedTime: 389.2 seconds
RetCode: 0
Status:  OK 
CheckDir: beadarray.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings beadarray_2.23.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.4-bioc/meat/beadarray.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘beadarray/DESCRIPTION’ ... OK
* this is package ‘beadarray’ version ‘2.23.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘beadarray’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  ‘Nozzle.R1’ ‘affy’ ‘ggbio’ ‘hwriter’ ‘lumi’ ‘vsn’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
  ‘ggplot2’ ‘methods’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Unexported objects imported by ':::' calls:
  ‘BeadDataPackR:::combineFiles’ ‘BeadDataPackR:::readHeader’
  ‘Biobase:::assayDataStorageMode’
  See the note in ?`:::` about the use of this operator.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘illuminaForeground_6x6’ ‘locsIndicesToGrid’ ‘obtainLocs’
  ‘simpleXMLparse’
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... NOTE
Foreign function call to a different package:
  .Call("roundLocsFileValues", ..., PACKAGE = "BeadDataPackR")
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
* checking R code for possible problems ... NOTE
.mergePhenodata: no visible global function definition for ‘new’
.onAttach: no visible global function definition for
  ‘packageDescription’
addFeatureData: no visible global function definition for ‘is’
addFeatureData: no visible global function definition for ‘new’
analyseDirectory: no visible global function definition for
  ‘read.table’
calculateDetection: no visible global function definition for
  ‘txtProgressBar’
calculateDetection: no visible global function definition for
  ‘setTxtProgressBar’
checkRegistration: no visible global function definition for ‘new’
combinedControlPlot: no visible binding for global variable ‘Control’
combinedControlPlot: no visible binding for global variable ‘Negative’
combinedControlPlot: no visible global function definition for
  ‘density’
combinedControlPlot: no visible global function definition for ‘ggplot’
combinedControlPlot: no visible global function definition for ‘aes’
combinedControlPlot: no visible binding for global variable ‘ID’
combinedControlPlot: no visible binding for global variable
  ‘Log2Intensity’
combinedControlPlot: no visible binding for global variable
  ‘ControlType’
combinedControlPlot: no visible global function definition for
  ‘geom_boxplot’
combinedControlPlot: no visible global function definition for
  ‘geom_hline’
combinedControlPlot: no visible global function definition for
  ‘facet_wrap’
combinedControlPlot: no visible global function definition for
  ‘geom_point’
combinedControlPlot: no visible binding for global variable ‘Masked’
convertBeadLevelList: no visible global function definition for ‘new’
createGEOMatrix: no visible global function definition for
  ‘write.table’
createGEOMeta: no visible global function definition for ‘data’
createGEOMeta: no visible binding for global variable ‘metaTemplate’
createTargetsFile: no visible global function definition for
  ‘read.table’
expressionQCPipeline: no visible global function definition for
  ‘ggsave’
expressionQCPipeline: no visible global function definition for ‘jpeg’
expressionQCPipeline: no visible global function definition for ‘pdf’
expressionQCPipeline: no visible global function definition for ‘png’
expressionQCPipeline: no visible global function definition for
  ‘dev.off’
expressionQCPipeline: no visible global function definition for
  ‘openPage’
expressionQCPipeline: no visible global function definition for
  ‘hwrite’
expressionQCPipeline: no visible global function definition for
  ‘hwriteImage’
expressionQCPipeline: no visible global function definition for
  ‘closePage’
expressionQCPipeline: no visible global function definition for
  ‘write.csv’
generateE: no visible global function definition for ‘aggregate’
genericBeadIntensityPlot: no visible global function definition for
  ‘runif’
getPlatformSigs: no visible global function definition for
  ‘lumiHumanIDMapping_dbconn’
getPlatformSigs: no visible global function definition for
  ‘dbListTables’
getPlatformSigs: no visible global function definition for
  ‘dbListFields’
getPlatformSigs: no visible global function definition for ‘dbGetQuery’
getPlatformSigs: no visible global function definition for
  ‘lumiMouseIDMapping_dbconn’
getPlatformSigs: no visible global function definition for
  ‘lumiRatIDMapping_dbconn’
imageplot: no visible global function definition for ‘ggplot’
imageplot: no visible global function definition for ‘aes’
imageplot: no visible binding for global variable ‘Var1’
imageplot: no visible binding for global variable ‘Var2’
imageplot: no visible binding for global variable ‘value’
imageplot: no visible global function definition for ‘geom_tile’
imageplot: no visible global function definition for
  ‘scale_fill_gradient’
imageplot: no visible global function definition for ‘theme’
imageplot: no visible global function definition for ‘element_blank’
limmaDE: no visible global function definition for ‘model.matrix’
limmaDE: no visible global function definition for ‘new’
makeControlProfile: no visible global function definition for
  ‘packageDescription’
makeReport: no visible global function definition for ‘as’
makeReport: no visible global function definition for ‘newCustomReport’
makeReport: no visible global function definition for ‘newSection’
makeReport: no visible global function definition for ‘newTable’
makeReport: no visible global function definition for ‘newParagraph’
makeReport: no visible global function definition for ‘addTo’
makeReport: no visible global function definition for ‘autoplot’
makeReport: no visible global function definition for ‘plotIdeogram’
makeReport: no visible global function definition for ‘tracks’
makeReport: no visible global function definition for ‘ggsave’
makeReport: no visible global function definition for ‘newFigure’
makeReport: no visible binding for global variable ‘IMAGE.TYPE.RASTER’
makeReport: no visible binding for global variable ‘PROTECTION.PUBLIC’
makeReport: no visible global function definition for ‘ggplot’
makeReport: no visible global function definition for ‘aes’
makeReport: no visible binding for global variable ‘value’
makeReport: no visible global function definition for ‘geom_boxplot’
makeReport: no visible global function definition for ‘facet_wrap’
makeReport: no visible global function definition for ‘writeReport’
maplots: no visible global function definition for ‘ggplot’
maplots: no visible global function definition for ‘aes’
maplots: no visible binding for global variable ‘value.1’
maplots: no visible binding for global variable ‘value’
maplots: no visible global function definition for ‘stat_binhex’
maplots: no visible global function definition for ‘theme_bw’
maplots: no visible global function definition for ‘xlab’
maplots: no visible global function definition for ‘ylab’
maplots: no visible global function definition for ‘facet_wrap’
maplots: no visible global function definition for ‘theme’
maplots: no visible global function definition for ‘ggtitle’
normaliseIllumina: no visible global function definition for ‘new’
normaliseIllumina: no visible global function definition for ‘lumiT’
normaliseIllumina: no visible global function definition for
  ‘normalize.qspline’
normaliseIllumina: no visible global function definition for ‘vsn2’
normaliseIllumina: no visible global function definition for ‘rsn’
numberOfChannels: no visible global function definition for
  ‘read.table’
numberOfColumns: no visible global function definition for ‘read.table’
outlierplot2: no visible global function definition for ‘geom_vline’
outlierplot2: no visible global function definition for ‘geom_hline’
plot.smooth.line: no visible global function definition for ‘approx’
plot.smooth.line: no visible global function definition for ‘lowess’
plotBeadIntensities: no visible global function definition for
  ‘rainbow’
plotBeadLocations2: no visible global function definition for ‘qplot’
plotBeadLocations2: no visible global function definition for ‘opts’
plotBeadLocations2: no visible global function definition for
  ‘theme_blank’
plotChipLayout: no visible global function definition for ‘rgb’
plotProbe: no visible global function definition for ‘data’
plotProbe: no visible binding for global variable ‘genesymbol’
plotProbe: no visible global function definition for ‘autoplot’
plotProbe: no visible global function definition for ‘tracks’
plotProbe: no visible global function definition for ‘aes’
plotProbe: no visible binding for global variable ‘PROBEQUALITY’
plotTIFF: no visible global function definition for ‘col2rgb’
plotTIFF: no visible global function definition for ‘rgb’
poscontPlot: no visible global function definition for ‘rainbow’
rankInvariantNormalise: no visible global function definition for
  ‘normalize.invariantset’
rankInvariantNormalise: no visible global function definition for
  ‘predict’
readBeadSummaryData: no visible global function definition for
  ‘read.table’
readBeadSummaryData: no visible global function definition for ‘new’
readIdatFiles: no visible global function definition for ‘new’
readIllumina: no visible global function definition for ‘new’
readQC: no visible global function definition for ‘read.table’
readQC: no visible global function definition for ‘new’
readSampleSheet: no visible global function definition for ‘read.csv’
setFeatureData: no visible global function definition for
  ‘packageDescription’
setFeatureData: no visible global function definition for ‘new’
squeezedVarOutlierMethod: no visible global function definition for
  ‘loess’
squeezedVarOutlierMethod: no visible global function definition for
  ‘predict’
suggestAnnotation: no visible binding for global variable
  ‘platformSigs’
suggestAnnotation_Vector: no visible global function definition for
  ‘data’
suggestAnnotation_Vector: no visible binding for global variable
  ‘platformSigs’
summarize: no visible global function definition for ‘new’
summarize: no visible global function definition for
  ‘packageDescription’
viewBeads: no visible global function definition for ‘col2rgb’
viewBeads: no visible global function definition for ‘menu’
viewBeads: no visible global function definition for ‘rgb’
writeOutFiles: no visible global function definition for ‘write.table’
[,ExpressionSetIllumina-ANY: no visible global function definition for
  ‘assayDataEnvLock’
boxplot,ExpressionSetIllumina: no visible global function definition
  for ‘ggplot’
boxplot,ExpressionSetIllumina: no visible global function definition
  for ‘aes’
boxplot,ExpressionSetIllumina: no visible binding for global variable
  ‘Var2’
boxplot,ExpressionSetIllumina: no visible binding for global variable
  ‘value’
boxplot,ExpressionSetIllumina: no visible global function definition
  for ‘geom_boxplot’
boxplot,ExpressionSetIllumina: no visible global function definition
  for ‘scale_fill_discrete’
boxplot,ExpressionSetIllumina: no visible global function definition
  for ‘facet_wrap’
boxplot,ExpressionSetIllumina: no visible global function definition
  for ‘theme’
boxplot,ExpressionSetIllumina: no visible global function definition
  for ‘element_blank’
boxplot,ExpressionSetIllumina: no visible global function definition
  for ‘element_text’
boxplot,ExpressionSetIllumina: no visible global function definition
  for ‘ylab’
channel,ExpressionSetIllumina-ANY: no visible global function
  definition for ‘new’
coerce,ExpressionSet-ExpressionSetIllumina: no visible global function
  definition for ‘new’
coerce,limmaResults-GRanges: no visible global function definition for
  ‘new’
combine,beadLevelData-beadLevelData: no visible global function
  definition for ‘new’
initialize,ExpressionSetIllumina: no visible global function definition
  for ‘new’
initialize,ExpressionSetIllumina: no visible global function definition
  for ‘callNextMethod’
initialize,limmaResults: no visible global function definition for
  ‘new’
initialize,limmaResults: no visible global function definition for
  ‘callNextMethod’
plot,limmaResults-ANY: no visible global function definition for
  ‘ggplot’
plot,limmaResults-ANY: no visible global function definition for ‘aes’
plot,limmaResults-ANY: no visible global function definition for
  ‘geom_point’
plot,limmaResults-ANY: no visible global function definition for
  ‘facet_wrap’
plotMA,ExpressionSetIllumina: no visible global function definition for
  ‘ggplot’
plotMA,ExpressionSetIllumina: no visible global function definition for
  ‘aes’
plotMA,ExpressionSetIllumina: no visible binding for global variable
  ‘value.1’
plotMA,ExpressionSetIllumina: no visible binding for global variable
  ‘value’
plotMA,ExpressionSetIllumina: no visible global function definition for
  ‘stat_binhex’
plotMA,ExpressionSetIllumina: no visible global function definition for
  ‘theme_bw’
plotMA,ExpressionSetIllumina: no visible global function definition for
  ‘xlab’
plotMA,ExpressionSetIllumina: no visible global function definition for
  ‘ylab’
plotMA,ExpressionSetIllumina: no visible global function definition for
  ‘facet_wrap’
plotMA,ExpressionSetIllumina: no visible global function definition for
  ‘theme’
plotMA,ExpressionSetIllumina: no visible global function definition for
  ‘ggtitle’
show,ExpressionSetIllumina: no visible global function definition for
  ‘callNextMethod’
show,limmaResults: no visible global function definition for ‘p.adjust’
Undefined global functions or variables:
  Control ControlType ID IMAGE.TYPE.RASTER Log2Intensity Masked
  Negative PROBEQUALITY PROTECTION.PUBLIC Var1 Var2 addTo aes aggregate
  approx as assayDataEnvLock autoplot callNextMethod closePage col2rgb
  data dbGetQuery dbListFields dbListTables density dev.off
  element_blank element_text facet_wrap genesymbol geom_boxplot
  geom_hline geom_point geom_tile geom_vline ggplot ggsave ggtitle
  hwrite hwriteImage is jpeg loess lowess lumiHumanIDMapping_dbconn
  lumiMouseIDMapping_dbconn lumiRatIDMapping_dbconn lumiT menu
  metaTemplate model.matrix new newCustomReport newFigure newParagraph
  newSection newTable normalize.invariantset normalize.qspline openPage
  opts p.adjust packageDescription pdf platformSigs plotIdeogram png
  predict qplot rainbow read.csv read.table rgb rsn runif
  scale_fill_discrete scale_fill_gradient setTxtProgressBar stat_binhex
  theme theme_blank theme_bw tracks txtProgressBar value value.1 vsn2
  write.csv write.table writeReport xlab ylab
Consider adding
  importFrom("grDevices", "col2rgb", "dev.off", "jpeg", "pdf", "png",
             "rainbow", "rgb")
  importFrom("methods", "as", "callNextMethod", "is", "new")
  importFrom("stats", "aggregate", "approx", "density", "loess",
             "lowess", "model.matrix", "p.adjust", "predict", "runif")
  importFrom("utils", "data", "menu", "packageDescription", "read.csv",
             "read.table", "setTxtProgressBar", "txtProgressBar",
             "write.csv", "write.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
squeezedVarOutlierMethod 51.708  0.064  51.774
summarize                28.248  1.088  29.335
limmaDE                  21.732  0.064  21.794
calculateOutlierStats    15.572  1.272  16.845
outlierplot              12.900  1.112  14.011
controlProbeDetection    12.212  0.068  12.992
calculateDetection       12.020  0.004  12.023
identifyControlBeads     11.536  0.068  11.957
makeQCTable               9.732  0.912  10.640
normaliseIllumina        10.328  0.228  10.768
insertSectionData         9.520  0.952  10.587
maplots                   9.692  0.384  10.081
poscontPlot               9.400  0.492   9.894
quickSummary              7.040  0.572   7.620
imageplot                 6.704  0.100   7.044
addFeatureData            6.696  0.072   6.871
annotationInterface       5.920  0.096   6.025
showArrayMask             5.064  0.572   5.637
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.4-bioc/meat/beadarray.Rcheck/00check.log’
for details.


beadarray.Rcheck/00install.out:

* installing *source* package ‘beadarray’ ...
** libs
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c BASH.c -o BASH.o
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c HULK.c -o HULK.o
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c determiningGridPositions.c -o determiningGridPositions.o
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c findAllOutliers.c -o findAllOutliers.o
findAllOutliers.c: In function ‘findBeadStatus’:
findAllOutliers.c:196:29: warning: ‘ma’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   if((inten[k] < (m + *nmads*ma)) && (inten[k] > (m - *nmads*ma))){
                             ^
findAllOutliers.c:196:53: warning: ‘m’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   if((inten[k] < (m + *nmads*ma)) && (inten[k] > (m - *nmads*ma))){
                                                     ^
findAllOutliers.c: In function ‘findAllOutliers’:
findAllOutliers.c:226:20: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  beadStatusStruct *status; 
                    ^
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c imageProcessing.c -o imageProcessing.o
imageProcessing.c: In function ‘illuminaBackground’:
imageProcessing.c:88:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
     #pragma omp parallel shared(nthreads, nbeads, imageHeight, pixelMatrix, coords) private(tid, start, end)
 ^
imageProcessing.c: In function ‘medianBackground’:
imageProcessing.c:135:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
     #pragma omp parallel shared(nthreads, nbeads, imageHeight, pixelMatrix, coords) private(tid, start, end)
 ^
imageProcessing.c: In function ‘illuminaSharpen’:
imageProcessing.c:244:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
     #pragma omp parallel for private(i, j) shared(sharpened) num_threads(2)
 ^
imageProcessing.c:251:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
     #pragma omp parallel for private(i, j, sum) shared(sharpened) num_threads(2)
 ^
gcc -shared -L/home/biocbuild/bbs-3.4-bioc/R/lib -L/usr/local/lib -o beadarray.so BASH.o HULK.o determiningGridPositions.o findAllOutliers.o imageProcessing.o -L/home/biocbuild/bbs-3.4-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.4-bioc/meat/beadarray.Rcheck/beadarray/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (beadarray)

beadarray.Rcheck/beadarray-Ex.timings:

nameusersystemelapsed
BASH0.0040.0000.002
BASHCompact0.0000.0000.001
BASHDiffuse000
BASHExtended0.0000.0000.001
GEO000
GEOtemplate0.0000.0000.002
HULK0.0000.0000.001
addFeatureData6.6960.0726.871
annotationInterface5.9200.0966.025
backgroundCorrectSingleSection0.0000.0000.001
beadarrayUsersGuide0.0040.0000.002
boxplot3.2400.0203.259
calculateDetection12.020 0.00412.023
calculateOutlierStats15.572 1.27216.845
class-beadLevelData2.2360.2042.441
class-illuminaChannel0.0000.0000.002
combine4.2200.6164.836
controlProbeDetection12.212 0.06812.992
createTargetsFile0.0040.0000.001
expressionQCPipeline0.0320.0040.073
generateNeighbours0.0000.0000.001
getBeadData2.3600.0403.004
identifyControlBeads11.536 0.06811.957
illuminaOutlierMethod2.7480.1563.288
imageplot6.7040.1007.044
insertBeadData2.8520.5603.633
insertSectionData 9.520 0.95210.587
limmaDE21.732 0.06421.794
makeControlProfile0.5480.0000.546
makeQCTable 9.732 0.91210.640
maplots 9.692 0.38410.081
medianNormalise1.5680.0481.616
metrics1.8240.1081.933
noOutlierMethod1.8440.0961.940
normaliseIllumina10.328 0.22810.768
numBeads1.8680.1882.056
outlierplot12.900 1.11214.011
plotBeadIntensities2.6760.3363.011
plotBeadLocations2.5000.3282.825
plotChipLayout0.0000.0000.001
plotMAXY000
poscontPlot9.4000.4929.894
quickSummary7.0400.5727.620
readBeadSummaryData0.0000.0000.001
sectionNames1.8440.1281.971
showArrayMask5.0640.5725.637
squeezedVarOutlierMethod51.708 0.06451.774
summarize28.248 1.08829.335
transformationFunctions2.7000.5843.282
weightsOutlierMethod000