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BioC 3.4: INSTALL report for TFBSTools on moscato1

This page was generated on 2016-09-21 03:45:21 -0700 (Wed, 21 Sep 2016).

Package 1198/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TFBSTools 1.11.6
Ge Tan
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/TFBSTools
Last Changed Rev: 120650 / Revision: 121152
Last Changed Date: 2016-09-01 09:23:13 -0700 (Thu, 01 Sep 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: TFBSTools
Version: 1.11.6
Command: rm -rf TFBSTools.buildbin-libdir && mkdir TFBSTools.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/TFBSTools_1.11.6.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=TFBSTools.buildbin-libdir --merge-multiarch TFBSTools_1.11.6.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL TFBSTools_1.11.6.zip && rm TFBSTools_1.11.6.tar.gz TFBSTools_1.11.6.zip
StartedAt: 2016-09-19 21:00:34 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 21:01:19 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 45.4 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf TFBSTools.buildbin-libdir && mkdir TFBSTools.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/TFBSTools_1.11.6.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=TFBSTools.buildbin-libdir --merge-multiarch TFBSTools_1.11.6.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL TFBSTools_1.11.6.zip  && rm TFBSTools_1.11.6.tar.gz TFBSTools_1.11.6.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  142k  100  142k    0     0  24.8M      0 --:--:-- --:--:-- --:--:-- 69.3M

install for i386

* installing *source* package 'TFBSTools' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c matrixAlignerDynamic.c -o matrixAlignerDynamic.o
matrixAlignerDynamic.c: In function 'score':
matrixAlignerDynamic.c:235:22: warning: 'best_pntr' may be used uninitialized in this function [-Wmaybe-uninitialized]
   while (current_pntr->father != NULL){ // while the father of the current pointer exists, walk through the best posible alignment
                      ^
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c R_init_TFBSTools.c -o R_init_TFBSTools.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o TFBSTools.dll tmp.def matrixAlignerDynamic.o R_init_TFBSTools.o -Lc:/local323/lib/i386 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/TFBSTools.buildbin-libdir/TFBSTools/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a new generic function for 'seqLogo' in package 'TFBSTools'
Creating a generic function for 'colSums' from package 'base' in package 'TFBSTools'
Creating a generic function for 'rowSums' from package 'base' in package 'TFBSTools'
Creating a generic function for 'update' from package 'stats' in package 'TFBSTools'
Creating a generic function for 'as.matrix' from package 'base' in package 'TFBSTools'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'TFBSTools' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c matrixAlignerDynamic.c -o matrixAlignerDynamic.o
matrixAlignerDynamic.c: In function 'score':
matrixAlignerDynamic.c:235:22: warning: 'best_pntr' may be used uninitialized in this function [-Wmaybe-uninitialized]
   while (current_pntr->father != NULL){ // while the father of the current pointer exists, walk through the best posible alignment
                      ^
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG     -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_init_TFBSTools.c -o R_init_TFBSTools.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o TFBSTools.dll tmp.def matrixAlignerDynamic.o R_init_TFBSTools.o -Lc:/local323/lib/x64 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/TFBSTools.buildbin-libdir/TFBSTools/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TFBSTools' as TFBSTools_1.11.6.zip
* DONE (TFBSTools)
* installing to library 'D:/biocbld/bbs-3.4-bioc/R/library'
package 'TFBSTools' successfully unpacked and MD5 sums checked