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BioC 3.4: CHECK report for MBttest on moscato1

This page was generated on 2016-09-21 03:48:04 -0700 (Wed, 21 Sep 2016).

Package 701/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MBttest 1.1.0
Yuan-De Tan
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MBttest
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: MBttest
Version: 1.1.0
Command: rm -rf MBttest.buildbin-libdir MBttest.Rcheck && mkdir MBttest.buildbin-libdir MBttest.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MBttest.buildbin-libdir MBttest_1.1.0.tar.gz >MBttest.Rcheck\00install.out 2>&1 && cp MBttest.Rcheck\00install.out MBttest-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=MBttest.buildbin-libdir --install="check:MBttest-install.out" --force-multiarch --no-vignettes --timings MBttest_1.1.0.tar.gz
StartedAt: 2016-09-20 11:34:20 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 11:35:37 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 76.7 seconds
RetCode: 0
Status:  OK  
CheckDir: MBttest.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MBttest.buildbin-libdir MBttest.Rcheck && mkdir MBttest.buildbin-libdir MBttest.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MBttest.buildbin-libdir MBttest_1.1.0.tar.gz >MBttest.Rcheck\00install.out 2>&1 && cp MBttest.Rcheck\00install.out MBttest-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=MBttest.buildbin-libdir --install="check:MBttest-install.out" --force-multiarch --no-vignettes --timings MBttest_1.1.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/MBttest.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MBttest/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MBttest' version '1.1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MBttest' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
           user system elapsed
mbetattest 7.52   0.02    7.53
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
           user system elapsed
mbetattest 8.99   0.03    9.01
myheatmap  5.47   0.00    5.48
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

MBttest.Rcheck/00install.out:


install for i386

* installing *source* package 'MBttest' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'MBttest' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MBttest' as MBttest_1.1.0.zip
* DONE (MBttest)

MBttest.Rcheck/examples_i386/MBttest-Ex.timings:

nameusersystemelapsed
MBttest-package2.370.012.40
betaparametVP0.270.020.28
betaparametab000
betaparametw000
betattest0.870.030.91
dat0.060.000.06
jkttcell0.060.000.07
maplot0.470.010.48
mbetattest7.520.027.53
mtprocedure0.120.000.12
mtpvadjust0.020.000.02
myheatmap4.820.014.91
oddratio000
pratio000
simulat0.30.00.3
skjt0.060.000.06
smbetattest2.230.002.23

MBttest.Rcheck/examples_x64/MBttest-Ex.timings:

nameusersystemelapsed
MBttest-package2.810.042.87
betaparametVP0.290.020.32
betaparametab000
betaparametw000
betattest1.090.011.10
dat0.070.020.08
jkttcell0.040.000.05
maplot0.610.000.61
mbetattest8.990.039.01
mtprocedure0.150.000.16
mtpvadjust0.020.000.01
myheatmap5.470.005.48
oddratio000
pratio000
simulat0.300.020.31
skjt0.040.000.04
smbetattest2.670.012.69