Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.4: CHECK report for Category on moscato1

This page was generated on 2016-09-21 03:41:34 -0700 (Wed, 21 Sep 2016).

Package 159/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Category 2.39.0
Bioconductor Package Maintainer
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Category
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Category
Version: 2.39.0
Command: rm -rf Category.buildbin-libdir Category.Rcheck && mkdir Category.buildbin-libdir Category.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Category.buildbin-libdir Category_2.39.0.tar.gz >Category.Rcheck\00install.out 2>&1 && cp Category.Rcheck\00install.out Category-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=Category.buildbin-libdir --install="check:Category-install.out" --force-multiarch --no-vignettes --timings Category_2.39.0.tar.gz
StartedAt: 2016-09-20 05:15:50 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 05:21:04 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 313.5 seconds
RetCode: 0
Status:  OK  
CheckDir: Category.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf Category.buildbin-libdir Category.Rcheck && mkdir Category.buildbin-libdir Category.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Category.buildbin-libdir Category_2.39.0.tar.gz >Category.Rcheck\00install.out 2>&1 && cp Category.Rcheck\00install.out Category-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=Category.buildbin-libdir --install="check:Category-install.out" --force-multiarch --no-vignettes --timings Category_2.39.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/Category.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Category/DESCRIPTION' ... OK
* this is package 'Category' version '2.39.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Category' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.linearMTestInternal: no visible global function definition for
  'setNames'
Undefined global functions or variables:
  setNames
Consider adding
  importFrom("stats", "setNames")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
ChrBandTree-class 5.08   0.01     5.1
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.4-bioc/meat/Category.Rcheck/00check.log'
for details.


Category.Rcheck/00install.out:


install for i386

* installing *source* package 'Category' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'Category' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Category' as Category_2.39.0.zip
* DONE (Category)

Category.Rcheck/examples_i386/Category-Ex.timings:

nameusersystemelapsed
ChrBandTree-class3.950.033.97
ChrMapHyperGParams-class000
ChrMapHyperGResult-class000
ChrMapLinearMParams-class000
ChrMapLinearMResult-class000
DatPkg-class0.030.000.03
HyperGResult-accessors0.880.011.25
LinearMResult-class000
MAPAmat3.260.003.26
applyByCategory0.010.000.01
cateGOryMatrix0.330.020.91
cb_parse_band_Hs0.020.000.01
cb_parse_band_Mm000
findAMstats000
getPathNames0.030.000.03
gseattperm1.590.021.61
hyperg0.510.010.53
makeChrBandGraph2.270.002.26
makeEBcontr0.110.000.11
probes2MAP0.120.000.13
probes2Path0.030.000.03
ttperm0.010.000.02

Category.Rcheck/examples_x64/Category-Ex.timings:

nameusersystemelapsed
ChrBandTree-class5.080.015.10
ChrMapHyperGParams-class000
ChrMapHyperGResult-class000
ChrMapLinearMParams-class000
ChrMapLinearMResult-class000
DatPkg-class0.010.020.03
HyperGResult-accessors0.860.050.90
LinearMResult-class000
MAPAmat4.020.004.03
applyByCategory000
cateGOryMatrix0.330.040.44
cb_parse_band_Hs000
cb_parse_band_Mm0.010.000.01
findAMstats000
getPathNames0.050.000.05
gseattperm1.610.051.65
hyperg0.570.020.60
makeChrBandGraph2.830.002.82
makeEBcontr0.140.000.14
probes2MAP0.150.000.16
probes2Path0.030.000.03
ttperm0.020.000.02