BioC experimental data: CHECK report for miRNATarget on morelia

Package: miRNATarget

Version: 1.9.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings miRNATarget_1.9.0.tar.gz

StartedAt: 2015-11-25 10:55:04 -0800 (Wed, 25 Nov 2015)

EndedAt: 2015-11-25 10:56:24 -0800 (Wed, 25 Nov 2015)

EllapsedTime: 79.5 seconds

RetCode: 0

Status:  OK

CheckDir: miRNATarget.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings miRNATarget_1.9.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.3-data-experiment/meat/miRNATarget.Rcheck’
* using R Under development (unstable) (2015-11-08 r69614)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.9.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... [3s/7s] OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [16s/18s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/Users/biocbuild/bbs-3.3-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNATarget)

name	user	system	elapsed
HS_conv_id	0.017	0.003	0.020
HS_refseq_to_affy_hc_g110	0.007	0.001	0.008
HS_refseq_to_affy_hg_focus	0.021	0.001	0.023
HS_refseq_to_affy_hg_u133_plus_2	0.090	0.002	0.093
HS_refseq_to_affy_hg_u133a	0.057	0.001	0.058
HS_refseq_to_affy_hg_u133a_2	0.075	0.001	0.076
HS_refseq_to_affy_hg_u133b	0.028	0.001	0.031
HS_refseq_to_affy_hg_u95a	0.034	0.001	0.037
HS_refseq_to_affy_hg_u95av2	0.032	0.001	0.033
HS_refseq_to_affy_hg_u95b	0.077	0.001	0.078
HS_refseq_to_affy_hg_u95c	0.015	0.000	0.016
HS_refseq_to_affy_hg_u95d	0.006	0.000	0.007
HS_refseq_to_affy_hg_u95e	0.015	0.001	0.016
HS_refseq_to_affy_huex_1_0_st_v2	1.495	0.033	1.604
HS_refseq_to_affy_hugene_1_0_st_v1	0.064	0.002	0.067
HS_refseq_to_affy_hugenefl	0.018	0.001	0.020
HS_refseq_to_affy_u133_x3p	0.101	0.002	0.106
HS_refseq_to_agilent_cgh_44b	0.013	0.001	0.015
HS_refseq_to_agilent_wholegenome	0.096	0.005	0.102
HS_refseq_to_canonical_transcript_stable_id	0.096	0.004	0.100
HS_refseq_to_ccds	0.052	0.002	0.056
HS_refseq_to_codelink	0.056	0.002	0.058
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k	0.003	0.000	0.003
HS_refseq_to_efg_agilent_wholegenome_4x44k_v1	0.002	0.000	0.003
HS_refseq_to_efg_agilent_wholegenome_4x44k_v2	0.003	0.001	0.004
HS_refseq_to_embl	1.087	0.013	1.117
HS_refseq_to_ensembl_exon_id	0.002	0.001	0.003
HS_refseq_to_ensembl_gene_id	0.067	0.002	0.071
HS_refseq_to_ensembl_peptide_id	0.057	0.002	0.059
HS_refseq_to_ensembl_transcript_id	0.074	0.003	0.076
HS_refseq_to_entrezgene	0.066	0.001	0.067
HS_refseq_to_hgnc_id	0.061	0.001	0.063
HS_refseq_to_hgnc_symbol	0.061	0.001	0.062
HS_refseq_to_hgnc_transcript_name	0.076	0.003	0.080
HS_refseq_to_illumina_humanht_12	0.065	0.002	0.070
HS_refseq_to_illumina_humanwg_6_v1	0.166	0.002	0.171
HS_refseq_to_illumina_humanwg_6_v2	0.061	0.001	0.062
HS_refseq_to_illumina_humanwg_6_v3	0.071	0.001	0.082
HS_refseq_to_interpro	0.198	0.003	0.457
HS_refseq_to_ipi	0.174	0.008	0.424
HS_refseq_to_merops	0.007	0.001	0.027
HS_refseq_to_pdb	0.304	0.009	0.704
HS_refseq_to_pfam	0.092	0.001	0.095
HS_refseq_to_phalanx_onearray	0.056	0.000	0.058
HS_refseq_to_protein_id	1.278	0.014	1.317
HS_refseq_to_refseq_dna	0.084	0.004	0.090
HS_refseq_to_refseq_genomic	0.001	0.001	0.002
HS_refseq_to_refseq_peptide	0.132	0.001	0.135
HS_refseq_to_rfam	0.004	0.001	0.005
HS_refseq_to_rfam_gene_name	0.002	0.000	0.003
HS_refseq_to_rfam_transcript_name	0.003	0.001	0.003
HS_refseq_to_smart	0.058	0.000	0.059
HS_refseq_to_tigrfam	0.007	0.000	0.008
HS_refseq_to_ucsc	0.126	0.001	0.128
HS_refseq_to_unigene	0.090	0.002	0.093
HS_refseq_to_uniprot_genename	0.058	0.001	0.060
HS_refseq_to_uniprot_genename_transcript_name	0.003	0.000	0.002
HS_refseq_to_uniprot_sptrembl	0.002	0.001	0.003
HS_refseq_to_uniprot_swissprot	0.003	0.000	0.004
HS_refseq_to_uniprot_swissprot_accession	0.003	0.000	0.004
HS_refseq_to_wikigene_id	0.003	0.001	0.003
HS_refseq_to_wikigene_name	0.218	0.002	0.222
MM_conv_id	0.004	0.001	0.004
MM_refseq_to_affy_mg_u74a	0.021	0.000	0.021
MM_refseq_to_affy_mg_u74av2	0.021	0.000	0.022
MM_refseq_to_affy_mg_u74b	0.016	0.001	0.017
MM_refseq_to_affy_mg_u74bv2	0.019	0.000	0.020
MM_refseq_to_affy_mg_u74c	0.005	0.000	0.005
MM_refseq_to_affy_mg_u74cv2	0.008	0.001	0.009
MM_refseq_to_affy_moe430a	0.044	0.001	0.046
MM_refseq_to_affy_moe430b	0.020	0.000	0.021
MM_refseq_to_affy_moex_1_0_st_v1	0.531	0.004	0.542
MM_refseq_to_affy_mogene_1_0_st_v1	0.051	0.001	0.053
MM_refseq_to_affy_mouse430_2	0.063	0.001	0.064
MM_refseq_to_affy_mouse430a_2	0.044	0.001	0.046
MM_refseq_to_affy_mu11ksuba	0.013	0.001	0.013
MM_refseq_to_affy_mu11ksubb	0.009	0.000	0.010
MM_refseq_to_agilent_wholegenome	0.079	0.005	0.085
MM_refseq_to_canonical_transcript_stable_id	0.080	0.003	0.084
MM_refseq_to_ccds	0.094	0.003	0.098
MM_refseq_to_codelink	0.043	0.000	0.044
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k	0.003	0.000	0.004
MM_refseq_to_efg_agilent_wholegenome_4x44k_v1	0.003	0.001	0.003
MM_refseq_to_efg_agilent_wholegenome_4x44k_v2	0.002	0.000	0.003
MM_refseq_to_embl	0.397	0.004	0.409
MM_refseq_to_ensembl_exon_id	0.003	0.000	0.004
MM_refseq_to_ensembl_gene_id	0.045	0.001	0.048
MM_refseq_to_ensembl_peptide_id	0.049	0.002	0.052
MM_refseq_to_ensembl_transcript_id	0.055	0.001	0.056
MM_refseq_to_entrezgene	0.050	0.001	0.052
MM_refseq_to_fantom	0.279	0.007	0.328
MM_refseq_to_illumina_mousewg_6_v1	0.190	0.001	0.197
MM_refseq_to_illumina_mousewg_6_v2	0.066	0.001	0.067
MM_refseq_to_interpro	0.151	0.002	0.154
MM_refseq_to_ipi	0.002	0.000	0.003
MM_refseq_to_merops	0.005	0.000	0.006
MM_refseq_to_mgi_id	0.048	0.001	0.049
MM_refseq_to_mgi_symbol	0.047	0.000	0.048
MM_refseq_to_mgi_transcript_name	0.045	0.000	0.047
MM_refseq_to_pdb	0.072	0.001	0.075
MM_refseq_to_pfam	0.081	0.000	0.082
MM_refseq_to_phalanx_onearray	0.040	0.000	0.042
MM_refseq_to_protein_id	0.453	0.005	0.461
MM_refseq_to_refseq_dna	0.236	0.005	0.243
MM_refseq_to_refseq_peptide	0.091	0.001	0.093
MM_refseq_to_rfam	0.002	0.001	0.003
MM_refseq_to_rfam_gene_name	0.002	0.000	0.003
MM_refseq_to_rfam_transcript_name	0.002	0.001	0.002
MM_refseq_to_smart	0.039	0.000	0.040
MM_refseq_to_tigrfam	0.006	0.001	0.007
MM_refseq_to_ucsc	0.040	0.000	0.041
MM_refseq_to_unigene	0.064	0.000	0.065
MM_refseq_to_uniprot_genename	0.040	0.001	0.042
MM_refseq_to_uniprot_genename_transcript_name	0.003	0.001	0.004
MM_refseq_to_uniprot_sptrembl	0.002	0.000	0.003
MM_refseq_to_uniprot_swissprot	0.002	0.001	0.002
MM_refseq_to_uniprot_swissprot_accession	0.003	0.000	0.004
MM_refseq_to_wikigene_id	0.003	0.001	0.003
MM_refseq_to_wikigene_name	0.044	0.001	0.044
TBL2	0.928	0.104	1.047
TBL2_HS	1.458	0.212	1.689
TBL2_MM	0.861	0.166	1.906
conv_id	0.002	0.000	0.003
id_conv	0.039	0.001	0.040