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BioC experimental data: CHECK report for GSBenchMark on morelia

This page was generated on 2015-11-25 16:26:38 -0800 (Wed, 25 Nov 2015).

Package 106/258HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSBenchMark 0.105.0
Bahman Afsari
Snapshot Date: 2015-11-25 07:17:28 -0800 (Wed, 25 Nov 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/GSBenchMark
Last Changed Rev: 3462 / Revision: 3504
Last Changed Date: 2015-10-13 13:20:35 -0700 (Tue, 13 Oct 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK [ OK ] OK 

Summary

Package: GSBenchMark
Version: 0.105.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings GSBenchMark_0.105.0.tar.gz
StartedAt: 2015-11-25 10:38:51 -0800 (Wed, 25 Nov 2015)
EndedAt: 2015-11-25 10:39:27 -0800 (Wed, 25 Nov 2015)
EllapsedTime: 36.3 seconds
RetCode: 0
Status:  OK 
CheckDir: GSBenchMark.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings GSBenchMark_0.105.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.3-data-experiment/meat/GSBenchMark.Rcheck’
* using R Under development (unstable) (2015-11-08 r69614)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GSBenchMark/DESCRIPTION’ ... OK
* this is package ‘GSBenchMark’ version ‘0.105.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GSBenchMark’ can be installed ... [1s/2s] OK
* checking installed package size ... NOTE
  installed size is 42.0Mb
  sub-directories of 1Mb or more:
    data  41.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [7s/7s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.3-data-experiment/meat/GSBenchMark.Rcheck/00check.log’
for details.


GSBenchMark.Rcheck/00install.out:

* installing *source* package ‘GSBenchMark’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GSBenchMark)

GSBenchMark.Rcheck/GSBenchMark-Ex.timings:

nameusersystemelapsed
GSBenchMarkDatasets0.3760.0200.400
bipolar_GDS21900.3250.0110.337
breast_GDS8070.3230.0090.335
diracpathways0.0140.0010.015
exprsdata0.4900.0250.519
leukemia_GSEA0.2970.0140.315
logexprsdata0.4630.0130.485
marfan_GDS29600.1560.0090.221
melanoma_GDS27350.4180.0180.460
parkinsons_GDS25190.6750.0350.785
phenotypes0.4680.0180.493
prostate_GDS2545_m_nf0.2580.0130.275
prostate_GDS2545_m_p0.4820.0170.501
prostate_GDS2545_p_nf0.4430.0190.465
sarcoma_data0.7380.0550.799
squamous_GDS25200.2940.0200.475